CANTATAdb - search

Detailed information on CNT30720204

BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 4e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30435195	Triticum spelta	Aegilops tauschii	56.01	54.75	99.37	317	forward

Expression of CNT30720204

SRR9114152: 569.45 RPKM

Peptides detected in this lncRNA

>peptide 1 (48 aa)
WNGLKAFRLIAYGHQNLSTHRITAVGDEIFRKHDTQGFSLNDKRDTSK*

>peptide 2 (72 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRRRRGRVWVGGRSGG

Sequence

>CNT30720204
TGGAATGGATTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCATAACAGCAGTAGGCGATGAAATATTCAGGAAACATG
ATACTCAAGGATTCAGTTTAAACGACAAACGGGACACATCTAAATGAGTTCGACTCTCGATAGGTAGGTAGGTAAAAGAGCAGAGCAAACGCAAGCCACC
TCTAAGCCTTCTGGTTGTAGACGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTT
GTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG
ACGTTGTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGAGGTCGCC
TCCGCGCGCTGCGTCGGCGACGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGGGCGGAGTGGAGGCT