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Detailed information on CNT30720193


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 5e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693708Triticum speltaOryza sativa34.2534.1286.1187forward
CNT30672419Triticum speltaSetaria viridis27.4738.5683.33150forward
CNT30520974Triticum speltaSetaria italica33.8822.4883.24185forward
CNT30178523Triticum speltaSecale cereale73.8171.8489.33403forward
CNT30285918Triticum speltaTriticum aestivum28.0232.5599.35153forward
CNT30220389Triticum speltaHordeum vulgare18.1322.6597.9899forward
CNT30384303Triticum speltaTriticum turgidum38.8335.0490.09212forward
CNT30435366Triticum speltaAegilops tauschii56.2367.47100307forward
CNT30240454Triticum speltaAvena sativa41.2163.9292.44225forward
CNT30656050Triticum speltaTriticum dicoccoides51.6545.9397.87282forward
CNT30130278Triticum speltaLolium perenne51.4732.0492.17281forward
CNT3010986Triticum speltaZea mays13.1922.2987.572forward
CNT30679870Triticum speltaTriticum urartu83.8863.790.39458forward
CNT30338878Triticum speltaEragrostis tef28.7520.1384.71157forward
CNT30368187Triticum speltaSorghum bicolor12.6428.1688.4169forward
CNT30149479Triticum speltaBrachypodium distachyon20.5129.0986.61112forward
CNT30101676Triticum speltaOryza rufipogon28.5736.7986.54156forward
CNT30576447Triticum speltaOryza barthii12.092287.8866forward
CNT30582819Triticum speltaEchinochloa crusgalli24.7316.1782.96135forward
CNT30116867Triticum speltaOryza nivara16.336.9388.7689forward
CNT30604128Triticum speltaOryza punctata12.4523.4588.2468forward

Expression of CNT30720193

SRR9114152: 59.11 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MHHARSIFPITDTKYNDQVSTEHIDRGDPSDQMRSMVHKHEARRGKKKDGI*

>peptide 2 (42 aa)
MVQKPVRSNHRRANDLVIACTMHAASFQLLIRSTTIKYQQNT*

Sequence

>CNT30720193
TGGATCGGCACTGTACCCTCTAGACAAGTAATTTAAACAGCCAGTACAGCAAAAACATGGTACAAAAACCAGTACGTAGCAATCATCGAAGAGCAAATGA
TCTAGTAATTGCATGCACCATGCACGCAGCATCTTTCCAATTACTGATACGAAGTACAACGATCAAGTATCAACAGAACACATAGATAGGGGAGATCCAT
CAGATCAGATGAGATCCATGGTACACAAGCACGAGGCGAGACGAGGGAAGAAGAAGGATGGGATTTAGATCTTGCCGCGTGGTCCCGGGGTGGGCGGCAG
CTGGGGCCCCTTCTTGATGGGGAGCAGGTCGGGGGAGGCGGTGGCGCTGACGTAGGCGAGCAGCGAGCCGCCGCCGAGCAGCAGCACCTTGAGCAGCAGC
CCCCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTAGGGCGACGCCGCGTCGCTGCCGTACAGGTCGAAGTAGACGC
TCTTCTCCCCGTACTTGGCCACCACCGCCGCCCCGCGAGCCCTGCG