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Detailed information on CNT30720142


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 4e-72

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Triticum speltaOryza sativa47.7724.587.13171forward
CNT30678594Triticum speltaSetaria viridis100.2863.0985.52359forward
CNT30640127Triticum speltaNymphaea colorata93.341.8583.83334forward
CNT30371538Triticum speltaArabidopsis thaliana44.6933.6887.5160forward
CNT30379210Triticum speltaManihot esculenta39.6626.3591.55142forward
CNT30504800Triticum speltaNicotiana attenuata43.8535.5287.26157forward
CNT30709049Triticum speltaGlycine max47.7724.6888.89171forward
CNT30283587Triticum speltaTriticum aestivum47.7723.8897.66171forward
CNT30224654Triticum speltaHordeum vulgare47.7711.287.13171forward
CNT30382785Triticum speltaTriticum turgidum47.7722.4798.25171forward
CNT30247087Triticum speltaAvena sativa47.7723.3694.15171forward
CNT30655883Triticum speltaTriticum dicoccoides47.7723.9598.25171forward
CNT30228891Triticum speltaAnanas comosus51.6827.8285.41185forward
CNT30689745Triticum speltaTriticum urartu47.7722.4498.25171forward
CNT30359416Triticum speltaLactuca sativa26.5413.2989.4795forward
CNT3024728Triticum speltaPopulus trichocarpa51.6822.7886.49185forward
CNT30593783Triticum speltaEragrostis curvula47.7732.3984.8171forward
CNT30333509Triticum speltaCynara cardunculus37.1524.1883.46133forward

Expression of CNT30720142

SRR9114152: 0.46 RPKM

Peptides detected in this lncRNA

>peptide 1 (38 aa)
CGRCGRRPRRHWWSWRSCTQPSGPWQGHRLGRHLVAGS*

>peptide 2 (36 aa)
WSMREKTSTTLVELEIMHTALWTLARSPPGTTPGGW*

>peptide 3 (74 aa)
VVDAGEDLDDTGGVGDHAHSPLDLGKVTAWDDTWWLVVDTTLEASGAPVNKLNSALGAVGDLSNGQLLMVSLLS*

Sequence

>CNT30720142
TGTGGTCGATGCGGGAGAAGACCTCGACGACACTGGTGGAGTTGGAGATCATGCACACAGCCCTCTGGACCTTGGCAAGGTCACCGCCTGGGACGACACC
TGGTGGCTGGTAGTTGATACCACACTTGAAGCCAGTGGGGCACCAGTCAACAAACTGAATAGTGCGCTTGGCGCTGTTGGTGATCTCAGCAACGGACAGC
TGCTCATGGTAAGCCTTCTCAGCTGAGATCACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTCTGGAATTCATTGA
CATCAACATTCAGAGCACCATCAAACCTCAGGGAAGCTGTCAGTGATGAAATGACCTG