Detailed information on CNT30720138


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 8e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3086234Triticum speltaVigna radiata48.5531.5188.02167forward
CNT30361585Triticum speltaSorghum bicolor30.2327.7396.15104forward
CNT30482824Triticum speltaChara braunii42.4419.1980.82146forward
CNT30430260Triticum speltaPapaver somniferum23.8414.0991.4682forward
CNT30570163Triticum speltaVitis vinifera49.1320.4186.39169forward
CNT3024647Triticum speltaPopulus trichocarpa48.2632.0587.35166forward
CNT30117821Triticum speltaOryza nivara5015.5194.77172forward

Expression of CNT30720138

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (38 aa)
CGRCGRRPRRHWWSWRSCTQPSGPWQGHRLGRHLVAGS*

>peptide 2 (36 aa)
WSMREKTSTTLVELEIMHTALWTLARSPPGTTPGGW*

>peptide 3 (94 aa)
VVDAGEDLDDTGGVGDHAHSPLDLGKVTAWDDTWWLVVDTTLEASGAPVNKLNSALAAQGGRAGGKHQSSPHQSQWARDLQRQHGGHASQHQSR*

Sequence

>CNT30720138
TGTGGTCGATGCGGGAGAAGACCTCGACGACACTGGTGGAGTTGGAGATCATGCACACAGCCCTCTGGACCTTGGCAAGGTCACCGCCTGGGACGACACC
TGGTGGCTGGTAGTTGATACCACACTTGAAGCCAGTGGGGCACCAGTCAACAAACTGAATAGTGCGCTTGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGC
ACCAGTCCTCACCTCATCAATCACAGTGGGCTCGAGATCTACAAAGACAGCACGGGGGACATGCTTCCCAGCACCAGTCTCGCTGAAGAAGGTGTTGAAA
GCATCATCACCTCCCCCAACGGTCTTGTCACCGGGCATCTGGCC