Detailed information on CNT30720110


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 8e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530180Triticum speltaEucalyptus grandis32.1238.5296.55203forward
CNT30316655Triticum speltaCorylus avellana40.0380.3293.68253forward
CNT30545885Triticum speltaIpomoea triloba41.1457.2791.15260forward
CNT30628786Triticum speltaVigna unguiculata40.5152.2492.97256forward
CNT30220676Triticum speltaHordeum vulgare40.8245.8399.61258forward
CNT30241998Triticum speltaAvena sativa40.1932.0798.03254forward
CNT30623440Triticum speltaDaucus carota40.3512.8190.98255forward
CNT30369422Triticum speltaOryza glumipatula40.1919.4295.67254forward
CNT30326410Triticum speltaAsparagus officinalis39.7220.9390.84251forward
CNT30576569Triticum speltaOryza barthii40.1920.9996.85254forward
CNT30499448Triticum speltaDigitaria exilis39.8733.3896.83252forward
CNT30116662Triticum speltaOryza nivara40.1911.2496.85254forward

Expression of CNT30720110

SRR9114152: 409.72 RPKM

Peptides detected in this lncRNA

>peptide 1 (68 aa)
IFRDPTTLLRSAKHRIRKPTWDRLKAFGLIAYGHQNLSTHRTTAVCDEIFRKHDTQGFSLKDKRDTSK*

>peptide 2 (73 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVRGRLRALRRRRRRRSRVWVRGRSGG*

Sequence

>CNT30720110
ACATTTTTCGTGATCCCACCACCTTATTAAGATCAGCAAAGCATAGAATAAGAAAGCCGACATGGGATAGATTAAAAGCATTTGGACTGATAGCATACGG
ACACCAAAATTTAAGCACGCATCGCACTACAGCAGTATGCGATGAAATATTCAGGAAACATGATACTCAAGGTTTCAGTTTAAAAGACAAACGGGACACA
TCTAAATGAGTTCGATTCTCGATAGGTAGGTAAAAAGAGCAGAGCAAACGCGAGCCACCTCTAAGCCTTCTGGTTGTAGACGTAGGTCTTCTTCTTGCGC
TTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGG
CGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGAT
GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGCGAGGTCGCCTCCGCGCGCTGCGGCGGCGACGGCGGCGGCGGAGTAGGGTT
TGGGTTAGGGGGCGGAGTGGAGGCTAGGGTTT