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Detailed information on CNT30720077


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 4e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30246600Triticum speltaAvena sativa29.2236.0994.5218forward

Expression of CNT30720077

SRR9114152: 224.87 RPKM

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVRGRLRALRRRRRRRSRVWVRGRSGG*

>peptide 2 (68 aa)
IFRDPTTLLRSAKHRIRKPTWDRLKAFGLIAYGHQNLSTHRTTAVCDEIFRKHDTQGFSLKDKRDTSK*

Sequence

>CNT30720077
ACATTTTTCGTGATCCCACCACCTTATTAAGATCAGCAAAGCATAGAATAAGAAAGCCGACATGGGATAGATTAAAAGCATTTGGACTGATAGCATACGG
ACACCAAAATTTAAGCACGCATCGCACTACAGCAGTATGCGATGAAATATTCAGGAAACATGATACTCAAGGTTTCAGTTTAAAAGACAAACGGGACACA
TCTAAATGAGTTCGATTCTCGATAGGTAGGTAAAAAGAGCAGAGCAAACGCGAGCCACCTCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTG
CCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCAGTCGGCGTTGGGGCACTCCTTCCTGAGCCTGGTCACCTTGCCGGTGGCGT
CGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTGGC
GCCGCCGCGGAGGCGGAGCACCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCC
ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGCGAGGTCGCCTCCGCGCGCTGCGGCGGCGACGGCGGC
GGCGGAGTAGGGTTTGGGTTAGGGGGCGGAGTGGAGGCTAGGGTTT