CANTATAdb - search

Detailed information on CNT30720017

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 6e-83

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-20

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674447	Triticum spelta	Setaria viridis	22.4	27.78	96.22	185	forward
CNT30178120	Triticum spelta	Secale cereale	47.58	43.96	97.2	393	forward
CNT30285265	Triticum spelta	Triticum aestivum	39.83	43.75	100	329	forward
CNT30656101	Triticum spelta	Triticum dicoccoides	39.95	44.3	97.88	330	forward
CNT30456592	Triticum spelta	Saccharum spontaneum	26.76	26.89	95.48	221	forward
CNT30368046	Triticum spelta	Sorghum bicolor	33.78	45.74	95.7	279	forward

Expression of CNT30720017

SRR9114152: 271.57 RPKM

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSSVMVLPVRVFTKICIFAAVGWSPPRAAAATAVRRRGWVWAGRRGGME

Sequence

>CNT30720017
ATCAGAACAACAAAGCATAGACATGAAATAGATTAACGTCATCAGAATGACCAAAATTTAAGCTCGCATCCCATCTCAGCAATAGACGATCAAATATCCA
GGAAACATAACATAATACTCCAAGATTTCAGTTTTCAAAGACAAACGGGACACATATAAATGAGTTCGATTTTAGCAGAGCAAACGCAAGCCACCTCTAA
GCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTCCCGGCGCCGCACTCGGCGTTGGGGC
ACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTT
GGGCTTGGTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTGGCG
CCACCGCGGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGA
GGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCCAGCGTGATGGTCTTGCC
CGTCAGGGTCTTCACGAAGATCTGCATCTTCGCGGCGGTGGGGTGGTCGCCTCCGCGCGCTGCGGCGGCGACGGCAGTGCGGCGGCGGGGTTGGGTTTGG
GCTGGGCGTCGGGGTGGAATGGAGGC