Detailed information on CNT30720008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615873Triticum speltaSesamum indicum32.9218.3588.7580reverse complement
CNT30712184Triticum speltaGlycine max52.2621.1796.85127reverse complement
CNT30637537Triticum speltaCapsicum annuum40.3316.3188.7898reverse complement
CNT30177674Triticum speltaSecale cereale97.1211.6397.46236reverse complement
CNT30221081Triticum speltaHordeum vulgare59.677.1699.31145forward
CNT30714122Triticum speltaMalus domestica golden37.4522.0396.791reverse complement
CNT30627901Triticum speltaDaucus carota70.3714.6293.57171reverse complement
CNT30362263Triticum speltaSorghum bicolor38.6810.8798.9494reverse complement
CNT30595932Triticum speltaOryza meridionalis101.2318.5195.93246reverse complement
CNT30318962Triticum speltaAsparagus officinalis70.378.295.91171reverse complement
CNT30148380Triticum speltaBrachypodium distachyon100.8218.0797.96245reverse complement
CNT30726606Triticum speltaLupinus angustifolius70.3714.592.98171reverse complement

Expression of CNT30720008

SRR9114152: 241.31 RPKM

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GSLFWRPHVPPVVWRHGDVKRKGMEFFSLLA*

>peptide 2 (47 aa)
IPFLASPCPPCGVAAWGCQKERDGVFLAFGVAGLPLGGPRDGLLAQW*

>peptide 3 (61 aa)
DPFFGVPMSPLWCGGMGMSKGKGWSFSRFWRSRPPFGRPARRAISSVVERAPDNCVVVPGL*

Sequence

>CNT30720008
GGATCCCTTTTTTGGCGTCCCCATGTCCCCCCTGTGGTGTGGCGGCATGGGGATGTCAAAAGGAAAGGGATGGAGTTTTTCTCGCTTTTGGCGTAGCAGG
CCTCCCTTTGGGAGGCCCGCGCGACGGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCA
CATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCAAAGATG