Detailed information on CNT30719922


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 1e-67

BLAST vs NONCODE:
NONBRAT001321, E-value = 6e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675375Triticum speltaSetaria viridis28.2659.2297.6167forward
CNT30698329Triticum speltaQuercus lobata51.6164.6283.28305forward
CNT30591253Triticum speltaMusa acuminata20.8139.4291.06123forward
CNT3084857Triticum speltaVigna radiata28.7613.8483.53170forward
CNT30240523Triticum speltaAvena sativa60.4157.0396.08357forward
CNT30464179Triticum speltaSaccharum spontaneum22.6727.4695.52134forward
CNT30596421Triticum speltaOryza meridionalis48.5640.8885.71287forward
CNT30148402Triticum speltaBrachypodium distachyon43.1551.9391.37255forward

Expression of CNT30719922

SRR9114152: 129.93 RPKM

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 2 (78 aa)
MSSSVLFWYLRISRSATVPGRKRWGFFTPPVAGADLRAALVASCLRGALPPVDFLAVCFVRAIGSVELASWARRKDCWG

Sequence

>CNT30719922
AAATCAGATTGCTAACTTCTCATTGATGATGATAACAAGATGGTACCATCACATACAGTACATCACACCATAACACAACTGTCGAGGAACCTTACTACCA
CAGACAAGGGCTAATAAGAAACTAGTAACGCATCTCTACACCTCGAGACCAGATCAGACACTAGGATTCTAGGAAGCAGCCTAGGCCCTCTCGCCACGGA
TGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCGACGAGGTAGGCCTC
GGCGGCCTCCTGCAGCGCGGAGACGGCGGAGCTCTGGAAGCGGAGCTTGCGGATGAGCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCCCGGAGCGCG
ACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTCACGCCGCCGGTGGCCGGGGCGGACTTGCGCGCCGCCTTGGTCGCCAGCTGCTTGCGCGGCGCCTTGC
CGCCGGTGGACTTCCTCGCCGTCTGCTTCGTGCGGGCCATCGGGAGTGTGGAGCTAGCTTCGTGGGCGCGGAGAAAGGATTGCTGGGGAGA