Detailed information on CNT30719891


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30176909Triticum speltaSecale cereale32.9421.6881.55168forward
CNT30283705Triticum speltaTriticum aestivum39.6114.43100202forward
CNT30382812Triticum speltaTriticum turgidum75.6961.3799.74386forward
CNT30656215Triticum speltaTriticum dicoccoides39.6127.8699.5202forward
CNT30679018Triticum speltaTriticum urartu33.5323.5583.04171forward

Expression of CNT30719891

SRR9114152: 7.45 RPKM

Peptides detected in this lncRNA

>peptide 1 (70 aa)
RAQAPAKAIAAAFACRRSPPADPWEKAGNCRASDRLGEAPLRRDVAGGRIGAHQDGVHHHYGHLFCSGKN*

>peptide 2 (36 aa)
RPSPGQGYSSCFRVPSFPSSRSLGEGGELQGVRPAG*

Sequence

>CNT30719891
CGCGCCCAAGCCCCGGCCAAGGCTATAGCAGCTGCTTTCGCGTGCCGTCGTTCCCCTCCAGCAGATCCCTGGGAGAAGGCGGGGAACTGCAGGGCGTCCG
ACCGGCTGGGTGAAGCGCCGCTTCGCCGTGATGTCGCAGGAGGTCGTATAGGCGCACATCAAGATGGCGTACATCACCATTACGGCCACCTTTTCTGCTC
AGGTAAAAACTAACTTCCTTCGGCGTTCGATGAATCTGTAGACTGTTTTGTGAGCTACAGTGGTTGCTACTATGCTAATAGCAGAAGTCTGGTGGGCAGT
GTTGATAATTAGTAGCACTAATTAGTGGCTGAGACTGCTCCAATTATCCAGCTGGTTATATTGTACGTAGTATAAAATACTTGGTTGAGTGATTGCCTTT
TCCTAAAGAATATTTTCCAATTAAATCATGAATGATTTTGAGTTCATCTCTTCCTGGATCTCCTCTAGTTATATTATAAATGCTATGCATCCTGACATAT
GCACTTCCTT