Detailed information on CNT30719766


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186386Triticum speltaSecale cereale20.4840.8583.6250reverse complement
CNT30283261Triticum speltaTriticum aestivum98.1290.551001198forward
CNT30383312Triticum speltaTriticum turgidum98.1293.011001198forward
CNT30443351Triticum speltaAegilops tauschii39.64100.8386.57484forward
CNT30655853Triticum speltaTriticum dicoccoides38.5783.6698.51471forward
CNT30681623Triticum speltaTriticum urartu43.9822.8493.67537forward

Expression of CNT30719766

SRR9114152: 3.87 RPKM

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MESGRDCGNRSRRCTDEQPTMTTTNSRLSNKESIARAIIVRMCLVQPKVTGLVMESGSGGITA*

>peptide 2 (52 aa)
MGSVAASSARLRRAAPRPAVDLAGSKTGPSRLVSLASGTPKASPRLWLTRSL*

>peptide 3 (58 aa)
MRTRCKLNKQRRKNIPTDDEVAGAPSMLKNTVDVDPQRGQFPINLDLFSFDPGATTME*

>peptide 4 (39 aa)
MRAGNPAGEPDPQKLHQHPWSPEGIAATDQDDARTNNQP*

>peptide 5 (33 aa)
ATHSTVREDSDREIHRSGPSPAARQELYSAVRL*

>peptide 6 (29 aa)
MLIHREDNFLSILIYSPLIRGQQQWNRLV*

Sequence

>CNT30719766
CAGCCACTCATTCCACTGTGAGGGAGGATTCCGACCGAGAAATCCACCGTTCAGGTCCGTCGCCGGCGGCAAGACAGGAGCTGTATAGCGCCGTCCGTCT
CTGATGCGCTTCGCCGCCCGGAGCTGTCACGGCTAGCGCCACCCGTCTCCGGCGCGATTCGCCGCCAGGAGCCACGGGGTTCGAAGGCAGTAAGACAGGA
ATCGCCGTCGCTCACCTCCGGCATGCTGCGCGGCCTGGAGCCGTTGTCTTGGCTGGAGGCAAGATGGGATCCGTCGCGGCTAGCTCTGCTCGCCTAAGGC
GCGCTGCGCCACGCCCGGCCGTGGACTTGGCCGGCAGCAAAACGGGGCCGTCGCGGCTAGTGTCGCTCGCCTCCGGCACACCCAAGGCCAGCCCAAGGTT
GTGGCTGACCCGCTCCCTGTGAGGTGGTGGCACGGTGGAACTGCAGCGCGTGCAGCCGGTGGCTGAGATTCCGCGGGAGGTCGCGCCGTCACAGTGGAAG
ATGCGAACTCGATGCAAACTCAACAAGCAAAGGCGCAAGAACATACCTACGGACGATGAAGTGGCAGGAGCTCCGTCCATGCTGAAGAACACCGTAGATG
TTGATCCACAGAGAGGACAATTTCCTATCAATCTTGATCTATTCTCCTTTGATCCGGGGGCAACAACAATGGAATAGATTGGTATGAGAAAGGATGGATG
AAGTCACGAAGAGATTTTGGCGGCAATCTGGTGTTAGGCGGGAGATAAACCTGTCGTTTTGCTGATTTTTTAGAGCTAACTGCAATTAGAGAGATACGCT
GGGTTGTTTAAGTGGTGGGGTCCTACCAGGACAGGTGTCGGCCACCCGTTGGCCCTGCACCATAATGCGTGCTGGGAACCCTGCAGGAGAGCCCGACCCA
CAAAAATTACACCAACATCCATGGAGTCCGGAAGGGATTGCGGCAACAGATCAAGACGATGCACGGACGAACAACCAACCATGACCACTACAAATAGCCG
TCTGTCCAACAAGGAGAGCATAGCTCGGGCGATTATTGTTAGGATGTGTTTGGTACAACCAAAGGTAACGGGACTGGTAATGGAATCAGGTAGCGGTGGG
ATCACAGCGTAATAGGAGGATTTGCTTTTCTGTTTGTTTCATGCATGTAAAGGTATCAAGTTACAGAGCTAACAAGATCTGCTGTGTAATCAGATTGCAA
AAAAACAAAAAAATCTCACAG