Detailed information on CNT30719751


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 4e-43

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30130551Triticum speltaLolium perenne49.1341.798.59284forward
CNT3067544Triticum speltaLeersia perrieri48.4417.0296.79280forward
CNT30341903Triticum speltaEragrostis tef48.7933.4197.16282forward
CNT30582206Triticum speltaEchinochloa crusgalli43.628.4197.62252forward
CNT30594254Triticum speltaEragrostis curvula48.7934.0298.58282forward

Expression of CNT30719751

SRR9114152: 452.18 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
IRTWNRLKAFRLIAYGHQNLSTHRVTAVGDEIFRKHKTQGFSLNDKRDTSK*

>peptide 2 (73 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRRRRGRVWVGVRSGG*

Sequence

>CNT30719751
ATACGGACATGGAATAGATTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCGTTACAGCAGTAGGCGATGAAATATTCA
GGAAACATAAGACTCAAGGTTTCAGTTTAAACGACAAACGGGACACATCTAAGTGAGTTCGACTCTCGATAGGTAGGTAAAAGAGCAGAGCAATCGCAAG
CAACCTCTAAGCCTTCTGGTTGTAGACGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGG
CCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGGAGG
TCGCCTCCGCGCGCTGCGGCGGCGACGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGTGCGGAGTGGAGGCTAGGGTTT