CANTATAdb - search

Detailed information on CNT30719745

BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 7e-33

BLAST vs NONCODE:
NONSTUT000620, E-value = 4e-16

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674769	Triticum spelta	Setaria viridis	27.16	27.44	97.78	135	forward
CNT30523034	Triticum spelta	Setaria italica	31.39	35.7	97.44	156	forward
CNT30367803	Triticum spelta	Sorghum bicolor	44.67	52.86	96.4	222	forward

Expression of CNT30719745

SRR9114152: 15.35 RPKM

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRRRRGRVWVGVRSGG*

>peptide 2 (51 aa)
IRTWNRLKAFRLIAYGHQNLSTHRVTAVGDEIFRKHKTQGFSLNDKRDTSK*

Sequence

>CNT30719745
ATACGGACATGGAATAGATTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCGTTACAGCAGTAGGCGATGAAATATTCA
GGAAACATAAGACTCAAGGTTTCAGTTTAAACGACAAACGGGACACATCTAAGTGAGTTCGACTCTCGATAGGTAGGTAAAAGAGCAGAGCAATCGCAAG
CAACCTCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCC
TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCA
TCTTGGCGGCGGTGGGAGGTCGCCTCCGCGCGCTGCGGCGGCGACGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGTGCGGAGTGGAGGCTAGGGTTT