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Detailed information on CNT30719439


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41142|PLDA1_RICCO, E-value = 2e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523111Malus domestica goldenSetaria italica24.7535.9481.76170forward
CNT30532445Malus domestica goldenEucalyptus grandis27.2238.2481.28187forward
CNT30375740Malus domestica goldenArabidopsis thaliana27.3729.2881.91188forward
CNT30729810Malus domestica goldenCorchorus capsularis25.476.1785.71175forward
CNT3046495Malus domestica goldenPrunus dulcis62.7453.3485.61431forward
CNT30314174Malus domestica goldenCamelina sativa10.3332.4287.3271forward
CNT3060266Malus domestica goldenArabidopsis lyrata21.1125.6683.45145forward
CNT30477502Malus domestica goldenArabidopsis halleri23.7346.8483.44163forward
CNT30705730Malus domestica goldenPrunus avium61.1487.6889.29420forward
CNT3022274Malus domestica goldenPopulus trichocarpa23.5833.2682.72162forward
CNT3099734Malus domestica goldenOryza rufipogon21.6920.8181.21149forward
CNT3051204Malus domestica goldenCucumis sativus29.1150.2580.5200forward

Expression of CNT30719439

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MAHTLYQSANHTTSLPHHYKTCCEHPAPLKTSMQVVKQIRLINLPSQILV*

Sequence

>CNT30719439
ATGAGAAGAAAACGAATTAAAATTACACTAAACTAATTGAACATGGCTCATACGTTATATCAGTCAGCAAATCACACCACATCATTACCACATCACTATA
AAACCTGCTGTGAACATCCTGCCCCATTAAAAACATCTATGCAGGTTGTGAAGCAGATAAGACTTATTAATCTACCATCACAAATACTAGTGTAAAACAA
AAAGACAATGTAGAAGGTTTTACTTTGACAACCCAAGCGACAAAGCACACTTAGGTAGTAAGGATTGGAGGAAGGTAGTCGGATTTGGCACCAAGGATAC
GAGCTTTGGTGTCAGGGAAGAATTCAAATCCTGGCAACTCTGTAACAGCTCCTTCGCTGGTAACACCGATTGGATAGCGAAGCAAGTGACCAGGCAAATC
GTGTTCAAGAGTTTCACTTGAATACAGATCCCAGTACTTGTCAGCAATCTGGTTCACCTTTGAAATACATTCAATGCTTTCTGGCTGGAGGAAGACCTCA
TCAAGCATCCCAAGGTGCTCATACCATAGTGCCATACGGAAACCATGGATCTGACCACGTGCTGGCTCCCTGACTGACAGATGATATGGTTGGTAGGCTC
CCATGGCTATTTCAGAGTCTCTCGCACCATCCATTGATCTCTGGTTGATGTTGGCAGATCCAATAATTATGTACTCATCGTCAACTG