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Detailed information on CNT30718631


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 4e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Malus domestica goldenSetaria italica40.7731.283.33234forward
CNT30530404Malus domestica goldenEucalyptus grandis61.8510083.66355forward
CNT30316147Malus domestica goldenCorylus avellana64.2949.5382.93369forward
CNT30700549Malus domestica goldenQuercus lobata67.4297.9783.98387forward
CNT30499549Malus domestica goldenCoffea canephora68.1279.883.63391forward
CNT30615836Malus domestica goldenSesamum indicum42.6863.9783.27245forward
CNT3020608Malus domestica goldenCitrullus lanatus67.9488.4481.79390forward
CNT30729539Malus domestica goldenCorchorus capsularis50.5243.1582.41290forward
CNT30524728Malus domestica goldenPhaseolus vulgaris53.3156.6782.03306forward
CNT30486152Malus domestica goldenOlea europaea59.0637.4680.53339forward
CNT30503775Malus domestica goldenNicotiana attenuata60.177.8882.32345forward
CNT3098150Malus domestica goldenSolanum tuberosum39.946.7380.79229forward
CNT30177095Malus domestica goldenSecale cereale34.4914.2984.34198forward
CNT30289293Malus domestica goldenTriticum aestivum21.9541.4587.3126forward
CNT30223417Malus domestica goldenHordeum vulgare34.3286.7882.74197forward
CNT30590847Malus domestica goldenMusa acuminata37.847.4882.95217forward
CNT3084565Malus domestica goldenVigna radiata44.0814.9783.4253forward
CNT30539234Malus domestica goldenBrassica napus38.524.1582.81221forward
CNT30511842Malus domestica goldenSolanum lycopersicum38.8548.6981.17223forward
CNT30143836Malus domestica goldenMedicago truncatula39.7239.1184.21228forward
CNT30244810Malus domestica goldenAvena sativa49.4835.1579.58284forward
CNT30261302Malus domestica goldenBrassica rapa58.5464.9980.36336forward
CNT30455867Malus domestica goldenSaccharum spontaneum66.7258.4780.68383forward
CNT30131528Malus domestica goldenLolium perenne49.8362.0484.62286forward
CNT30231964Malus domestica goldenAnanas comosus30.1414.1882.08173forward
CNT30653881Malus domestica goldenRosa chinensis67.636.3380.93388forward
CNT30339698Malus domestica goldenEragrostis tef5023.2484.32287forward
CNT30477892Malus domestica goldenArabidopsis halleri64.8134.7779.3372forward
CNT30595456Malus domestica goldenOryza meridionalis58.0158.4280.18333forward
CNT30360575Malus domestica goldenLactuca sativa57.4954.7382.42330forward
CNT30425316Malus domestica goldenPapaver somniferum37.845.0279.72217forward
CNT30570592Malus domestica goldenVitis vinifera36.4164.7185.17209forward
CNT30645151Malus domestica goldenCannabis sativa67.4240.6186.3387forward
CNT3055709Malus domestica goldenAmborella trichopoda54.5347.8680.51313forward
CNT30105598Malus domestica goldenOryza longistaminata67.2556.0280.57386forward
CNT30325711Malus domestica goldenAsparagus officinalis47.7485.8981.02274forward
CNT30102778Malus domestica goldenOryza rufipogon10.2823.3288.1459forward
CNT30574680Malus domestica goldenOryza barthii64.6340.580.59371forward
CNT30580197Malus domestica goldenEchinochloa crusgalli66.246.1280.53380forward
CNT30499107Malus domestica goldenDigitaria exilis41.1160.3684.32236forward
CNT30115589Malus domestica goldenOryza nivara64.632680.59371forward
CNT30594668Malus domestica goldenEragrostis curvula45.377.1581.54260forward
CNT30603506Malus domestica goldenOryza punctata67.0776.6981.3385forward
CNT30174824Malus domestica goldenVigna angularis45.9927.7981.44264forward
CNT30550386Malus domestica goldenOryza brachyantha40.7785.0982.05234forward
CNT30337932Malus domestica goldenCynara cardunculus64.9845.4979.89373forward
CNT30726386Malus domestica goldenLupinus angustifolius31.7120.2480.77182forward
CNT3050773Malus domestica goldenCucumis sativus66.968.3380.73384forward

Expression of CNT30718631

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LNAKPSVVVHGQSLCCAFSLIVAAPYTCQCDW*

>peptide 2 (70 aa)
MHRGCRASEVVDLVNFQQNRLDDVVSNQLELRVPEVVHQILLPPSEKIIKHDHAVPSRDQTVHEVAPHEPG

>peptide 3 (30 aa)
PQCQALCGSPWSESLLCVFPHRSSSLHLPM*

>peptide 4 (41 aa)
MPGKRGGRSGQLPAESARRRRVESARTSGSRSGAPNSPSSQ*

Sequence

>CNT30718631
ACCTCAATGCCAAGCCCTCTGTGGTAGTCCATGGTCAGAGTCTCTGCTGTGCGTTTTCCCTCATCGTAGCAGCTCCTTACACCTGCCAATGTGATTGGTA
AATGTGGTGAAGTTTGATATTCTCGCGCAGAGTTCCATCATGTCGGGGTCGAGGGGAGACATAAGAGAGTGGGAGAGTGACTCACCGATGGGGTTGACAT
TGCCCCAGTAGGACTCGACCTGAGGGTGCTGCAAAGGGTCACCATAAACCTCACTGGTGCTTGTGAGCAAGAAGCGTGCGCCAACCCTTTTTGCCAGTCC
AAGCATGTTCAGTGTTCCCACCACATTCGATATAATTGTCTTGACCGGATTGAACTTGTAATGCACAGGGGATGCCGGGCAAGCGAGGTGGTAGATCTGG
TCAACTTCCAGCAGAATCGGCTCGACGACGTCGTGTCGAATCAGCTCGAACTTCGGGTTCCCGAAGTGGTGCACCAAATTCTCCTTCCTCCCAGTGAAAA
AATTATCAAGCACGATCACGCTGTCCCCTCTCGCGATCAGACGGTCCACGAGGTGGCTCCCCACGAACCCGGCC