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Detailed information on CNT30718401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q27Z07|BIPS1_SORAU, E-value = 2e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378288Malus domestica goldenArabidopsis thaliana5.6622.0587.9358forward

Expression of CNT30718401

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MPCCPKLPFLQTQLLLHLVYNGGPTRVHTEKQGVPVLILSVNLFKSFSQKIHNTSTNKFGDFSR*

>peptide 2 (73 aa)
MLPYSLNTCLVALSFPSFKPNCSSTWSTMAGPPGCTLKNKEFQSLFFPSTFSKVLVRKSTTLPPTNLGTSPDK*

>peptide 3 (61 aa)
MLATTPCSELGMIVCLHATFSNSGLSILGSGLAPTITADAPSAKRAWPTSMSRWVSVSPWKN

Sequence

>CNT30718401
AGACAAACCCTTGCGACCTTATCAACCATTTTACTTCATAATAGTTTATTAATATGCTTCTTATGATCCCGGGTCTTGGAGCTTGCAACAAAACGGATAC
CTTTAATTTCTTTTGTTAATGTCTCAAAATCTTACAATAATGCATGCATATTTGCATGTACTCCAAACCAAATACAACAGAGTCTTATTGATTATATGAA
AAACAAAGTCTATGGACTAGCCGTACATATCTGGGCCCTCTAATCCAAAGACTATTATTCTTATGTATATAAACTGAAATAATCGCAATAACTGTGATCG
TGAAATACTTATTTGACTGGAAGAAAACTCGATCAGTTGCAGCAGGGGTGTCTATACACTGGTCATGCAGTACTCTTATCTCATCACATGAAATGCATAA
CCAATGTATGAATCGTTTCATGCAAGTTTTTAGCATGTAATAGATTCACTGCGTAGTACGGCTGTCTCAACAGTGAGTCCTGGTCCGATTCCAATCACGA
CACCCCATTCCAAACCTTCACCAGTTGTGGATTTGCCTTCCTCAATCGACTTCTTTCTCATATCATCCAAAATAAAGTGCACAGATGGAGCTCCCATGTT
GCCATACTCACTCAACACATGCCTTGTTGCCCTAAGCTTCCCTTCCTTCAAACCCAATTGCTCCTCCACCTGGTCTACAATGGCGGGCCCACCAGGGTGC
ACACTGAAAAACAAGGAGTTCCAGTCCTTATTCTTTCCGTCAACCTTTTCAAAAGTTTTAGTCAGAAAATCCACAACACTTCCACCAACAAATTTGGGGA
CTTCTCCCGATAAATAATAATTAAACCCCATTTCACGAATGTTGGCCACTACACCATGCTCTGAGTTAGGTATGATCGTCTGCCTGCATGCCACGTTTTC
AAACAGCGGCCTCTCAATTTTAGGCTCTGGATTAGCCCCAACTATCACAGCAGATGCTCCGTCAGCAAAAAGAGCCTGGCCCACCAGTATGTCAAGGTGG
GTGTCAGTGAGTCCGTGGAAAAAC