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Detailed information on CNT30718256


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671345Malus domestica goldenSetaria viridis84.6423.8788.8259reverse complement
CNT30702366Malus domestica goldenQuercus lobata98.6930.3287.75302reverse complement
CNT3094274Malus domestica goldenSolanum tuberosum47.0648.8190.28144reverse complement
CNT30221833Malus domestica goldenHordeum vulgare83.9918.8387.94257forward
CNT30508923Malus domestica goldenSolanum lycopersicum95.4287.4387.67292forward
CNT30554477Malus domestica goldenOryza glaberrima84.6435.8288.03259reverse complement
CNT30441199Malus domestica goldenAegilops tauschii84.6426.0888.8259forward
CNT30258490Malus domestica goldenAvena sativa47.7120.2291.1146forward
CNT30660235Malus domestica goldenTriticum dicoccoides84.6427.5288.42259reverse complement
CNT30202530Malus domestica goldenHelianthus annuus98.6941.288.41302forward
CNT30682011Malus domestica goldenTriticum urartu84.6426.5688.8259forward
CNT3056076Malus domestica goldenAmborella trichopoda85.6211.3887.4262forward
CNT30320583Malus domestica goldenAsparagus officinalis75.1620.9789.13230forward
CNT30118993Malus domestica goldenCitrus clementina84.9773.8681.92260forward
CNT3099471Malus domestica goldenOryza rufipogon33.0140.0895.05101reverse complement
CNT30576813Malus domestica goldenOryza barthii22.889.585.7170forward

Expression of CNT30718256

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MWKGSRSTDPRDNRLITPKAFIDGVVWHLDVDSSHPGVEKGPKGSVVRRFNGT*

>peptide 2 (39 aa)
MELFGTSMLTHHILGLKKVPRVRLFADSMVHELGLECVLF

Sequence

>CNT30718256
GAAAAGGTAGGCTTAAGCTAAAATTCTGTTGTTAAGCATAATGGTATATAAGCATGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCC
ATAGTGATCCGAGAGTCCCATGTGGAAGGGCTCTCGCTCGACGGATCCTAGGGATAATAGGCTGATAACTCCAAAAGCTTTTATCGATGGAGTTGTTTGG
CACCTCGATGTTGACTCATCACATCCTGGGGTTGAAAAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAATGGTACATGAGTTGGGTTTAGAATGTGTA
TTATTC