« Back to Malus domestica golden search


Detailed information on CNT30718107


BLAST search results

BLAST vs Swiss-Prot:
sp|Q942D4|BURP3_ORYSJ, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318042Malus domestica goldenCorylus avellana11.1122.7589.5848forward
CNT3048365Malus domestica goldenPrunus dulcis37.2713.3281.37161forward
CNT30157118Malus domestica goldenPistacia vera21.536.4186.0293forward
CNT30152079Malus domestica goldenPrunus persica43.2948.3285.56187forward

Expression of CNT30718107

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MELGFGSGPGFTPTYTGFPLCPVFTDTPPLPTPTLVPFPVFTPVPPLPPTFTLVPPPGFPFPAST

>peptide 2 (41 aa)
MDSAVSRGTKVCVFEFVVKCKFIVVPGRMSFSKKKIATFGS*

Sequence

>CNT30718107
GGCTGGATTCTCACACTCTTGAATTGTACCCTTGATTATATCCGCTTCCACGGAACCCGATTTCACTGAAAATTGGTTGAAGATTTCTGGCAGCTTGTTG
GACGAAAATGGGATGGATTCCGCAGTTTCGCGCGGCACAAAAGTTTGCGTGTTTGAATTTGTGGTGAAGTGCAAGTTCATTGTTGTTCCAGGACGCATGT
CTTTCTCCAAGAAGAAAATAGCAACGTTTGGGTCTTGATGGAGTTGGGTTTCGGGTCTGGTCCTGGTTTTACTCCAACATACACGGGCTTTCCCTTGTGC
CCTGTGTTTACGGACACTCCTCCTTTGCCAACACCAACGTTGGTTCCCTTCCCGGTGTTCACCCCAGTACCGCCTTTGCCTCCTACGTTCACGTTAGTGC
CACCGCCTGGCTTTCCTTTTCCGGCTTCCACA