Detailed information on CNT3071804


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708222Quercus suberGlycine max13.520.8490.4884forward
CNT30390564Quercus suberTriticum turgidum11.2523.0385.7170forward
CNT3011897Quercus suberZea mays15.1128.2385.1194forward
CNT30150001Quercus suberBrachypodium distachyon15.9231.3386.8799forward

Expression of CNT3071804

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RRFHRVHMQHNSSNMPCIMIEISGEQKSRFKH*

>peptide 2 (79 aa)
MLKRLTYSYWNRNNPHNFLQETGKQECRHLCIHSILSHNEKLHTSIQYQVHQHHITCHQLPPLPPPLQAFMHSFNTLPQ*

>peptide 3 (93 aa)
MKNSIHQFNTKYTNITLHAINFLLFLLLCRHLCIHSILSHNEKLHTSIQYQVHQHHITCHQLPPLPPPRTHPHQQWHPGIADTQKPDHSCYSQP

>peptide 4 (75 aa)
MPSTSSSSSSSAGIYAFIQYSPTMKNSIHQFNTKYTNITLHAINFLLFLLLVLILISSGILVLLILRNQIIHVTLS

>peptide 5 (77 aa)
MSPHLKSHINIYNGSLFPLPPFPTPQVHNKPETNLRLSNAKKINLQLLEQEQSTQLFARDRQTGVQAFMHSFNTLPQ*

Sequence

>CNT3071804
CTAGACGTTTTCACCGAGTACATATGCAGCATAATTCAAGCAATATGCCATGTATCATGATAGAAATCAGCGGGGAACAAAAGAGCAGATTTAAACATTG
ACAAAAGAAAATGAGCCCTCACTTAAAATCTCATATAAACATATATAATGGGTCCTTGTTCCCTTTACCCCCATTCCCTACTCCCCAAGTACATAACAAA
CCAGAAACAAACTTGAGATTGAGTAATGCTAAAAAGATTAACCTACAGCTACTGGAACAGGAACAATCCACACAACTTTTTGCAAGAGACAGGCAAACAG
GAGTGCAGGCATTTATGCATTCATTCAATACTCTCCCACAATGAAAAACTCCATACATCAATTCAATACCAAGTACACCAACATCACATTACATGCCATC
AACTTCCTCCTCTTCCTCCTCCTCTGCAGGCATTTATGCATTCATTCAATACTCTCCCACAATGAAAAACTCCATACATCAATTCAATACCAAGTACACC
AACATCACATTACATGCCATCAACTTCCTCCTCTTCCTCCTCCTCGTACTCATCCTCATCAGCAGTGGCATCCTGGTATTGCTGATACTCAGAAACCAGA
TCATTCATGTTACTCTCAGCCT