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Detailed information on CNT30717911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517589Malus domestica goldenJuglans regia25.0638.4283.82204forward
CNT3071407Malus domestica goldenQuercus suber20.0269.3682.21163forward
CNT3045720Malus domestica goldenPrunus dulcis27.0336.6782.27220forward
CNT30155140Malus domestica goldenPrunus persica14.6238.3984.03119forward
CNT30573048Malus domestica goldenVitis vinifera15.7226.2382.03128forward
CNT30706384Malus domestica goldenPrunus avium27.0334.5483.64220forward
CNT3031606Malus domestica goldenTheobroma cacao24.5743.9681.5200forward
CNT3027612Malus domestica goldenPopulus trichocarpa21.6210.3779.55176forward

Expression of CNT30717911

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVGRKSRCGLTEHKFSRPSRCGFASDMLLEPIFSSLLVDTVFLWQ*

>peptide 2 (37 aa)
MGGLDPKTAFAMVITPGFWLLRPAMAKALVFPTLSWK*

>peptide 3 (35 aa)
MVVVGIGSINADPKRNLGALINFGARWFGGTHLLV*

Sequence

>CNT30717911
TTCTTCCATGCATGAACAACGAGAGTAGCTAGTGGCGTGACCCGGTCCATTATTATTAAGGGAAAATTGGAGAATAAGAGCCCCAAGTCTCAATGGTGGT
GTCTCTGGTCCGAGCTGAGATGGTTAGTAGCCGGCCACATTAATAGTGCTGCATGCTTCGTCGTCCTCCTTTTTGTATTTTCTGATCAGACCCAAATGAG
TGGCTCATACGACATACTAATAAGATGGTGGTGGTGGGAATTGGTAGTATAAATGCTGACCCAAAGAGAAATTTAGGTGCCCTGATCAATTTTGGGGCGA
GGTGGTTTGGAGGAACGCATTTGCTTGTTTGAAGTGGATTGGAGAAGCAGATTGTTTGTTGTTTTGGATGAATCGAGCAGATCATTATGTTTGAGGTGTC
GAATGATTTTATCATGATCTCTGTGTTACAATAAGTTTAAACTCTCTTTTGTATTTGATGGTTGGTAGGAAGAGCAGATGTGGTTTGACAGAGCATAAAT
TTTCCAGGCCCAGCAGATGTGGGTTCGCCTCGGATATGCTGCTGGAACCAATTTTTTCTTCTCTTTTGGTTGATACGGTGTTCTTATGGCAATAAGATAA
TCAACCACATTATCGTCCACCTGGAATGCCTTGGCCAAAACATCAGGGTTGATGGGAGGGTTGGATCCGAAGACTGCATTCGCAATGGTGATCACTCCCG
GGTTCTGGCTGCTGAGACCGGCGATGGCCAAAGCATTGGTTTTTCCGACATTGAGTTGGAAGTGAATGAGACCGATTGGGAATACGAACACATCTCCCTT
GTACAACACTTTGG