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Detailed information on CNT30717839


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FI56|CLPC1_ARATH, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Malus domestica goldenOryza sativa59.2533.4479.4301forward
CNT30676635Malus domestica goldenSetaria viridis27.5640.2382.86140forward
CNT30271581Malus domestica goldenChenopodium quinoa25.795.4185.5131forward
CNT30404760Malus domestica goldenBeta vulgaris22.8313.3584.48116forward
CNT30631438Malus domestica goldenVigna unguiculata68.952.8782.29350forward
CNT30487971Malus domestica goldenOlea europaea61.426083.33312forward
CNT30709232Malus domestica goldenGlycine max25.7917.5690.08131forward
CNT30300179Malus domestica goldenTriticum aestivum25.210.9786.72128forward
CNT30393350Malus domestica goldenTriticum turgidum24.0212.1986.89122forward
CNT30561426Malus domestica goldenActinidia chinensis21.8515.0486.49111forward
CNT30171906Malus domestica goldenTrifolium pratense70.2840.8982.91357forward
CNT30144776Malus domestica goldenMedicago truncatula28.1510.8987.41143forward
CNT30254596Malus domestica goldenAvena sativa25.989.9586.36132forward
CNT30658759Malus domestica goldenTriticum dicoccoides60.0451.5279.02305forward
CNT30311914Malus domestica goldenCamelina sativa57.4847.2581.51292forward
CNT3062430Malus domestica goldenArabidopsis lyrata57.4825.3382.88292forward
CNT30625756Malus domestica goldenDaucus carota33.6635.2685.38171forward
CNT30685460Malus domestica goldenTriticum urartu24.0225.7486.89122forward
CNT30354596Malus domestica goldenLactuca sativa22.6410.3686.09115forward
CNT30150411Malus domestica goldenBrachypodium distachyon49.4149.780.88251forward
CNT30101573Malus domestica goldenOryza rufipogon55.1233.0679.64280forward
CNT30498115Malus domestica goldenDigitaria exilis59.4538.0877.81302forward
CNT30116632Malus domestica goldenOryza nivara25.3933.6883.72129forward
CNT30558331Malus domestica goldenPanicum hallii49.4130.3179.28251forward

Expression of CNT30717839

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSFTSSLVSCRKTIISSNLFKNSGQIQCVGLLSRSHCFQH*

>peptide 2 (53 aa)
RLWQGLGRTAAAVEHGHVSIRIDIHNDRVTFFDLPCKHLLSHAVLQESHDSSS*

>peptide 3 (45 aa)
MRRPPFSITLLPTLDVIIRSVFLKSTVLPLLSVNLPSSSIWSIMLK

>peptide 4 (58 aa)
GSGKDSGEPLLPLSTVTFPSESTSTMTESPSLISLASIFSAMLSSKSLMIALLRGLAP*

Sequence

>CNT30717839
TCGGCTCTGGCAAGGACTCGGGAGAACCGCTGCTGCCGTTGAGCACGGTCACGTTTCCATCAGAATCGACATCCACAATGACCGAGTCACCTTCTTTGAT
CTCCCTTGCAAGCATCTTCTCAGCCATGCTGTCCTCCAAGAGTCTCATGATAGCTCTTCTTAGAGGCCTGGCTCCGTAGCTCGGGTTGTATCCTTCGTCA
ACCACTCTATCTCTGAACCTCTCTGTCACTTGAAGCTCTATCTCTTTCTTCTTCAACCTCTCGAAAACCTCCTTGAGCATTATATCTGCTATGTCCTTCA
CCTCCAGCTTGGTGAGTTGTCGGAAAACAATCATTTCGTCCAACCTATTCAAGAACTCTGGTCAAATCCAATGCGTCGGCCTCCTTTCTCGATCACACTG
CTTCCAACATTAGATGTCATTATCAGAAGTGTATTCTTGAAATCCACGGTTCTGCCCTTGCTGTCGGTTAATCTTCCATCCTCGAGTATTTGGAGCATCA
TGTTGAAG