« Back to Malus domestica golden search


Detailed information on CNT30717508


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30610339Malus domestica goldenGossypium raimondii10.6625.8389.5386reverse complement
CNT30116753Malus domestica goldenOryza nivara10.6621.4587.2186forward

Expression of CNT30717508

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHILLTSQKNLLQRLVLLKNEPAYGILTESGAQM*

>peptide 2 (41 aa)
MPFFRELRRYQIGQDKACIIVVCSTDHFWSAEATWSIHTHL*

>peptide 3 (34 aa)
CGLFVLFFMERFIEEAPERLKMKDLSMVGLSLKT*

>peptide 4 (45 aa)
MKYIVSFSVFDFPIEAKPPRCAQTSLLPNGLGFSSLFFPSPSILTS

Sequence

>CNT30717508
TTGTGGTCTATTTGTCCTTTTCTTCATGGAGCGCTTCATCGAAGAGGCCCCTGAAAGGCTGAAAATGAAAGATTTGTCAATGGTCGGTTTGAGTCTCAAA
ACCTGAAGCAGCTTCAAGTTTGAGAAAGAAAATCCGGAAGGAACTCAGGCAAGAATTTCGAGATGCATATTTTGTTAACCTCTCAAAAGAATCTGCTCCA
GCGGTTGGTGCTTCTGAAGAATGAACCGGCATATGGGATACTGACTGAATCCGGTGCACAGATGTAGCAACTAACTCAGCTTTCAGGTTGGCTTCCCATG
TACAGCTCAGAGGAATGGGTGTGATCTTTTGAGTTTAGCATTGTATAGCGAGGGAAAATCGGTTAAAATGCCATTTTTTCGAGAGCTAAGAAGATACCAG
ATTGGCCAGGACAAGGCGTGCATCATAGTCGTCTGCAGTACTGACCATTTCTGGAGTGCTGAAGCAACGTGGTCGATTCATACCCACTTGTAGCATTTCA
CGCATGAGTAATAATTTTCACGTTCTTTCTTTCGGGAAGGGAGGATTAGAAAAATCTTATTGATTGCAGCTGTTTCCAAACCTCCGGGAAAAGCATGAAA
AGAAAACTTATGATACGGTCCCTCTGTCACTTCAAAAGTGAAAGGAGCGATCTTGTAATTCTTGGTCTATGAAGTACATTGTTAGCTTCTCTGTGTTTGA
TTTTCCCATTGAGGCCAAACCTCCGCGGTGTGCACAAACATCTTTACTTCCAAACGGATTAGGATTCTCTTCCCTCTTCTTTCCATCCCCTTCCATTCTC
ACCTCTC