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Detailed information on CNT30717085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7HIW5|PSBT_HYDCA, E-value = 2e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019629Malus domestica goldenCitrullus lanatus28.7954.0187.84222forward
CNT30401703Malus domestica goldenBeta vulgaris15.9539.8186.99123forward

Expression of CNT30717085

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTNHFTILVGTLGGSQKKIAKKIIPKFETKRNV*

>peptide 2 (35 aa)
MLRIPVEHLNLDQYQQKTSRNKVLAPCQMDLFFVP*

Sequence

>CNT30717085
GTTGAAGTACGGATCCTCCCAATATTGGGAGTATCCGTACTTCAATTGAGCTGATGACAAATCATTTCACCATTTTAGTTGGAACTTTAGGTGGTTCTCA
AAAAAAGATAGCGAAAAAAATTATTCCTAAATTTGAGACTAAAAGGAATGTATAAACCAATGCTTCCATAGATTCGATCGTGGTTTACAATTATAGCTTC
CATACCTGTTTATTTGGGATCGTCTCCCGGATAAATAAAGAACAAGAGTCAAAGAAAAGGCAGTGATTCAAATCTAGATTTATCTGGTACCCCCCATCTA
AAAATCACAAAAAGAAAATAAAAAAGAAAAGTAACAAGTAACAAAACATATTGTATCAGACTACTTGTCTTCTTGTAGTTGGATCTCCAAGCTTTTGGAA
TGCTCCGAATTCCAGTTGAGCATCTAAATCTGGATCAATACCAGCAAAAAACATCTCGAAACAAGGTTCTAGCTCCATGCCAAATGGATTTATTTTTTGT
CCCATAATCCCCCACTACTATATATATCGTGCAACGTGACATCTGTCTGTATGTTTTTTTTATTCATTCGATTTTTTTTTAAGCATAACATAATATAGCG
TATTTGTATAATTTATAATATAAAATATTCTTCCTTTAAGCATTCCTTAGCTCTGATTTATTGAATTTCCTTTTATCTATTTCTTCATCTTCATCGAAAC
ATATATCTTTCAATGCAATAGTTATATGACAAGTAGATCTTTTTGTAGGATAACCCCATCCTCGAGCCAGG