« Back to Malus domestica golden search


Detailed information on CNT30716706


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550263Malus domestica goldenIpomoea triloba38.462.0885.42240forward
CNT3019909Malus domestica goldenCitrullus lanatus42.3123.9882.95264forward

Expression of CNT30716706

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHHPAGVVANTKCCKLSYSPYRRRRYRKCAVGDS*

>peptide 2 (51 aa)
TISFLFLSLLYRKERMIRGVVYLIILSTRRTQVDIAPYICSFELEFINRMK*

>peptide 3 (43 aa)
MVSLVERRTRLKGFYTKLFSSSLKGAMHSLYGTLFIKNESFFF*

>peptide 4 (35 aa)
MVLYSLRMNLFFFRSYTDFIKVNATFRVSDMGRSN*

Sequence

>CNT30716706
ACTATATCTTTTCTTTTTCTTTCTCTCCTCTATAGAAAAGAGAGGATGATACGTGGCGTGGTATACTTGATCATTTTGTCAACAAGACGTACACAAGTTG
ACATAGCTCCATATATATGTTCTTTTGAGCTTGAATTCATAAATAGAATGAAATAATGGTGAGCCTAGTGGAGCGACGAACTCGGCTCAAGGGTTTCTAT
ACAAAGTTGTTCTCTTCTTCACTCAAGGGGGCAATGCACTCTTTGTATGGTACTTTATTCATTAAGAATGAATCTTTTTTTTTTTAGAAGTTATACGGAC
TTTATAAAAGTAAATGCCACGTTCCGTGTGTCAGATATGGGGCGTTCTAATTGAAGGGTCATACTTCTCGTCTTGGTCCTATTAGGGTAAGGCCAATGCA
CCATCCAGCCGGTGTGGTGGCGAACACGAAGTGCTGTAAGCTAAGCTATTCACCTTATAGACGGAGGAGATATAGAAAGTGTGCCGTGGGTGATTCATAA
GATTATATAGTAACACCAGTATATTATTTTATTTCACTTAGCTTGCCTCTCCCATGATTTTGTGGACCAACCAACCTCTCGCGAGTCTCTCTGCATTTTG
GGAGCAGAGCATGCAGTATGCAGC