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Detailed information on CNT30716580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225628Malus domestica goldenHordeum vulgare6.0825.8792.3152reverse complement
CNT3081516Malus domestica goldenBrassica juncea7.7222.9287.8866reverse complement
CNT30655367Malus domestica goldenRosa chinensis11.3520.2990.7297reverse complement

Expression of CNT30716580

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPAQCCGFERRVQYLETNVTAKENSSLHH*

>peptide 2 (31 aa)
WIAKNRSAKIIFSKLYPAHRFKPTVYFQNQF*

>peptide 3 (45 aa)
MARNFSICGSCQSSKFMKLENDSNLVHGPLDVEGALVGSSPISKV*

>peptide 4 (54 aa)
MLNLSNCIPRLKSSKPAQNSTRRTRRKAIQVPDHMKNRWLETFLSAAAANLQNL*

>peptide 5 (82 aa)
MKGKTKLQMLLVINFLAYKFLNRIDDLPELITLPSKSEHHSGDTEGSKMQFCHHIPTGKRFRSLSDAKKWMKAHELTYAQFE*

Sequence

>CNT30716580
GTGGATAGCAAAAAACAGGAGTGCAAAAATCATTTTTTCAAAACTTTATCCAGCCCACAGATTTAAACCCACTGTTTATTTTCAAAACCAGTTCTAAAGA
ATTCCATTGCATCTATTAAAGGACCGAAGACGCAATTTGTTAGTGCACAATTTCACTGAAAAAAGACGCTACTTATAGAGGCTAATGAAGGGCAAGACGA
AACTGCAGATGCTTCTGGTTATCAATTTTCTAGCATACAAATTTCTAAATCGGATTGATGATTTACCAGAGTTAATTACTTTGCCTAGTAAAAGTGAACA
CCACTCTGGGGACACGGAGGGATCCAAAATGCAGTTTTGCCATCATATTCCAACTGGAAAGCGATTCCGATCACTCAGTGATGCAAAGAAGTGGATGAAA
GCACATGAATTAACTTATGCTCAATTTGAGTAATTGCATACCCAGACTTAAGAGTTCTAAACCCGCACAAAATAGCACTAGAAGAACAAGGAGAAAAGCA
ATTCAGGTTCCCGATCATATGAAGAATCGATGGCTCGAAACTTTTCTATCTGCGGCAGCTGCCAATCTTCAAAATTTATGAAGCTTGAGAATGATTCTAA
TCTAGTTCATGGCCCATTAGATGTAGAAGGCGCTCTGGTGGGATCCTCACCTATATCAAAGGTTTAGAAGGCCTTTGTCCTATCTATTAGACAATGGACG
CCTTTCATTCCAATCTTCCTATTTGTTGTTCGGAAAAATAGTTGATAACTAGCAATGAATGCCCGCTCAATGCTGTGGGTTTGAAAGAAGAGTGCAATAT
CTTGAAACAAATGTAACTGCAAAGGAAAATAGCAGTTTGCATCATTGAATTGAAC