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Detailed information on CNT30716553


BLAST search results

BLAST vs Swiss-Prot:
sp|P46486|PSAF_FLATR, E-value = 1e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641545Malus domestica goldenNymphaea colorata25.2719.5383.73166forward
CNT30513785Malus domestica goldenJuglans regia30.5932.3287.06201forward
CNT30371574Malus domestica goldenArabidopsis thaliana23.1429.480.92152forward
CNT30618119Malus domestica goldenSesamum indicum29.0737.2384.29191forward
CNT30273262Malus domestica goldenChenopodium quinoa29.0711.5484.82191forward
CNT3019440Malus domestica goldenCitrullus lanatus29.5351.1987.63194forward
CNT30525128Malus domestica goldenPhaseolus vulgaris21.7733.1882.52143forward
CNT30195173Malus domestica goldenPisum sativum10.3521.3285.2968forward
CNT30709051Malus domestica goldenGlycine max57.3845.9279.05377forward
CNT3091235Malus domestica goldenSolanum tuberosum26.9414.7781.92177forward
CNT30562386Malus domestica goldenActinidia chinensis50.0860.2679.03329forward
CNT3086176Malus domestica goldenVigna radiata54.7944.578.61360forward
CNT30540845Malus domestica goldenBrassica napus17.223.8485.84113forward
CNT30144134Malus domestica goldenMedicago truncatula19.9425.182.44131forward
CNT30313614Malus domestica goldenCamelina sativa16.5928.0984.4109forward
CNT30623157Malus domestica goldenDaucus carota21.7714.4484.62143forward
CNT30620828Malus domestica goldenCajanus cajan15.8347.4985.58104forward
CNT3038681Malus domestica goldenCucumis melo25.8842.3985.88170forward
CNT30174403Malus domestica goldenVigna angularis21.7720.5883.92143forward
CNT3040196Malus domestica goldenMarchantia polymorpha15.2235.0986100forward

Expression of CNT30716553

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYRNKIPGVINSPQCLWSPLTIKWGSPSDPQSKPCLP*

>peptide 2 (85 aa)
QRHINDDLLLCRLLIIPNGNQVAPPNPPDPPSNVQEQNTRRDKLTPVPLVTADNQMGEPIRPTKQTLLAIVGKPPLSLLYGGLDG*

>peptide 3 (81 aa)
MSATAGMGAEPMRMEESASAVEKACMGDAVDIFSGVGLGFVGIVRDMVFFLYFCLGFVRRSTEEGELGSECGGQVFRILEE*

Sequence

>CNT30716553
GCCAAAGGCACATCAATGATGATCTCCTTCTGTGTCGGCTTCTTATCATCCCTAATGGCAATCAAGTAGCTCCTCCCAACCCACCCGATCCACCCAGCAA
TGTACAGGAACAAAATACCAGGCGTGATAAACTCACCCCAGTGCCTCTGGTCACCGCTGACAATCAAATGGGGGAGCCCATCCGACCCACAAAGCAAACC
CTGCTTGCCATAGTTGGAAAACCTCCTCTGAGTCTTCTCTATGGTGGCCTTGATGGCTAGGGCGGGTGCACTGTCGGGTGCATAGAGCTTCAGTGAGGAC
TCGAGTTTTTTGATCTGCTGCTTCTCACGCTTGGCGAACTGCTTGGAGTCTTTGCATGGGGTGAGTCCCGAGATGTCAGCAACTGCAGGCATGGGGGCCG
AGCCAATGAGGATGGAGGAGAGTGCGAGTGCAGTGGAGAAAGCCTGCATGGGCGATGCAGTCGATATTTTCTCTGGGGTAGGGTTAGGGTTTGTGGGAAT
TGTGAGAGACATGGTTTTTTTCCTCTATTTTTGTTTAGGGTTTGTGAGGAGGAGCACAGAGGAAGGAGAACTTGGAAGTGAGTGTGGAGGGCAGGTTTTT
AGAATCTTGGAGGAATAGAGACTGGTGGTGGAGGAGAGAGGAGGGAGAGTGGATAGG