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Detailed information on CNT30716479


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBS8|RPOC1_LOTJA, E-value = 7e-47

BLAST vs NONCODE:
NONVVIT002936, E-value = 5e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Malus domestica goldenQuercus lobata86.842.2288.26264forward
CNT30220823Malus domestica goldenHordeum vulgare76.977.480.77234forward
CNT30314046Malus domestica goldenCamelina sativa90.137.1585.77274forward
CNT3082978Malus domestica goldenBrassica juncea90.463.3987.64275forward
CNT3057109Malus domestica goldenAmborella trichopoda36.184.989.09110forward
CNT30104767Malus domestica goldenOryza rufipogon74.0138.279.11225forward

Expression of CNT30716479

Peptides detected in this lncRNA

>peptide 1 (83 aa)
EAIHIDVMKVRDLQQLQNIPNNRPFCQAESYEILPLFLQLHLKTTCKPYYDRPSLVVRGFHYQEVYLQPLAPNYPDTLVIPMA*

Sequence

>CNT30716479
GAGGCAATTCACATCGATGTAATGAAAGTGAGGGACCTACAACAATTACAGAACATCCCGAATAATCGACCCTTTTGTCAAGCAGAATCTTACGAAATCC
TCCCTCTTTTCCTTCAATTACATCTGAAAACAACTTGTAAACCTTATTATGACCGTCCTTCACTGGTTGTCCGCGGATTCCATTATCAAGAAGTGTATCT
ACAACCTCTTGCACCAAATTATCCTGACACATTAGTAATTCCCATGGCGTAGATCTACTAGTTGTTAAGAGATCAATAATGGCTGCTGGCACAGAGTTAG
CCAA