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Detailed information on CNT3071632


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38867|CP19C_ARATH, E-value = 3e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30613544Quercus suberArabis alpina14.727.1881.41156forward

Expression of CNT3071632

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MMLHILQKAQPIPTNSNINSTNVSVLHICIIDYHTFKRQILYNR*

>peptide 2 (46 aa)
MLQLEVLILKFQAINGLSSSPISLCEIPSLTHEVWDYAVKSRALVM*

>peptide 3 (42 aa)
LNHTVAIHNFTKHNMLPIKPLGLLSADKELRAIGVRSSISHR*

Sequence

>CNT3071632
TCCTTAACCACACTGTAGCCATCCACAACTTTACCAAACACAACATGCTTCCCATCAAGCCATTGGGTCTTCTCAGTGCAGATAAAGAACTGAGAGCCAT
TGGTGTTCGGTCCAGCATTAGCCATCGATAAAATTCCTGGCCCTGTATGCTTCAACTTGAAGTTCTCATCCTCAAATTTCAGGCCATAAATGGACTCTCC
TCCAGTCCCATTTCCCTTTGTGAAATCCCCTCCCTGACACATGAAGTTTGGGATTATGCGGTGAAATCCCGAGCCCTTGTAATGTAATGGCTTCCCAGAT
CTCCCAATCCCCTTCTCCCCTGTGCAAAGTGCACGGAAATTTTCAGCAGTTTTAGGTGTAACATCAGCAAATAGCTCCATTACAACTCGTCCAGCTTTCA
TCTTTCCAATCAGAATGTCAAAGAAAACCTTTGGATTTGACATCTTGTTTTCCCAATTAAAATCCTTATAAACAGTACTCCAATTTCGGACAACAGGTTT
CTGTTCAAATTAGAAATATGTGAGCACTCTCATTTCTTTAAAATGATGTTACATATTCTACAAAAAGCACAACCAATACCTACGAATTCAAACATAAATT
CTACCAATGTTTCTGTTTTACATATCTGCATCATAGATTATCACACATTCAAGAGACAGATTTTATATAACAGATAAGTTAAAACTCTATATAATCTGTA
AACTGATTAATCTTAATCCAAGCTTTTCAAAAGTCCAAATTAGCTACTCCTAATAATCTAATACAAACACTATTGTAAGTTCAGATTCCTTTCTCTTAAT
CCATATCCTTCAAGAACAGACAAGAAAGTTCCATATCAATATTGTAAAGTCAATAAAGACAAACACACTACACAAACATTATCCAACAACCAAGCCAGTA
AAACATCAACCCAGAACAAACAAAAGGCCCATCTTTTTAACAGTCACTCAACAGGTACATAATTAACAGTCAAGACTCAACACTAGGAACAAAAGGTATT
AACCATTGTTACCATATCACCATGTATTGTCCTTATTTCAACACAAATCAATCAAAAACAT