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Detailed information on CNT30716144


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691214Malus domestica goldenOryza sativa21.383.5286.1565forward
CNT30548155Malus domestica goldenIpomoea triloba22.71.2489.8669forward
CNT30702684Malus domestica goldenQuercus lobata24.343.390.5474reverse complement
CNT30190309Malus domestica goldenSecale cereale21.383.9787.6965forward
CNT30301278Malus domestica goldenTriticum aestivum21.384.0387.6965forward
CNT30395440Malus domestica goldenTriticum turgidum21.383.4987.6965forward
CNT30552615Malus domestica goldenOryza glaberrima21.382.6686.1565forward
CNT30253313Malus domestica goldenAvena sativa20.391.487.162forward
CNT30595788Malus domestica goldenOryza meridionalis21.385.3786.1565forward
CNT30369580Malus domestica goldenOryza glumipatula21.387.1886.1565forward
CNT30575434Malus domestica goldenOryza barthii21.382.1186.1565forward
CNT30495872Malus domestica goldenDigitaria exilis21.053.8289.0664forward
CNT30603626Malus domestica goldenOryza punctata21.382.5886.1565forward
CNT30726105Malus domestica goldenLupinus angustifolius22.376.0489.7168forward

Expression of CNT30716144

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHSILRTKEQMTITFTRCKLFRSAAILFEF*

>peptide 2 (46 aa)
MIVPVAFFQVPQLLPQACCLPLPKLFGVYTILLMEQTTTLPMTYLY*

Sequence

>CNT30716144
ACTTGAATCAAATTGCTAGGCTGTGTTGAAGATTCAATATAAAGCAATGATTGTACCTGTGGCATTCTTCCAAGTACCGCAATTGTTGCCTCAAGCTTGC
TGCCTCCCTTTGCCAAAACTATTTGGTGTCTACACCATTCTACTGATGGAACAAACAACAACATTACCGATGACTTACCTTTATTGAAATTGAAGGATAC
CTGCCATGCATAGTATCCTCCGCACTAAAGAGCAAATGACGATAACATTCACCCGTTGTAAGCTGTTCAGAAGTGCTGCAATCTTGTTTGAATTCTGATG
CCCG