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Detailed information on CNT30715685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000586, E-value = 7e-60

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Malus domestica goldenSetaria viridis23.5834.5486.76287reverse complement
CNT30378673Malus domestica goldenArabidopsis thaliana36.8135.9386.38448forward
CNT30283003Malus domestica goldenChenopodium quinoa23.529.9588.81286forward
CNT30505560Malus domestica goldenNicotiana attenuata36.8120.2687.05448forward
CNT3089926Malus domestica goldenSolanum tuberosum23.512.9389.51286forward
CNT30219690Malus domestica goldenHordeum vulgare23.5841.988.5287forward
CNT30147396Malus domestica goldenMedicago truncatula35.1714.3985.98428reverse complement
CNT30245388Malus domestica goldenAvena sativa6.9824.5795.2985forward
CNT30605073Malus domestica goldenGossypium raimondii36.8129.4786.16448forward
CNT3067980Malus domestica goldenLeersia perrieri5.2621.2698.4464forward
CNT30346086Malus domestica goldenEragrostis tef23.5837.8688.5287reverse complement
CNT30359771Malus domestica goldenLactuca sativa36.8142.8786.38448reverse complement
CNT3038324Malus domestica goldenCucumis melo23.515.1688.46286forward
CNT30151167Malus domestica goldenBrachypodium distachyon9.7820.3886.55119forward
CNT3099864Malus domestica goldenOryza rufipogon6.9836.895.2985forward
CNT30557400Malus domestica goldenPanicum hallii23.7521.0688.58289reverse complement
CNT3039925Malus domestica goldenMarchantia polymorpha22.6855.6585.51276reverse complement

Expression of CNT30715685

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLDLGWFKEHFVICLALRFNLVGRPLHWLFVGIVKPCGDTEKVKEIR*

>peptide 2 (88 aa)
MCRLPNQNIGDHPSSRSYGAISPHSFDMFLSSTLIYSTCSPASVWGMASSPSQFQFFFPGSFNLDDYDNSRDYKKTRDNSKAVHSALS*

>peptide 3 (70 aa)
VLQSTRRYSASSRRIQFHRVHVRDSGAVRDTIDIYRGFHSKLLTLLLLTFQQRAGVRLYIVVPHSRVLCF*

>peptide 4 (77 aa)
MCVRGRRYSGSGLLTETGTVRVAASTCFLERAFSSNPMGSGVVTLLHPKQFRLFLPCLRKSYLLFPVMRSYMRTKRK*

>peptide 5 (43 aa)
GSYSLPVGTPHLHGEFNFTGSMSETAGQLEILLTFTGASIQSF*

>peptide 6 (35 aa)
MMAMKVNVCQRQEIFGIGAPHRNRHSESGSIHLFP*

>peptide 7 (39 aa)
MLRDDLSSIYELKFTKFDTVSLNRNYVKLIKVNGNWFQY*

Sequence

>CNT30715685
GGGTCTTACAGTCTACCCGTAGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCAGAGACAGCGGGGCAGTTAGAGATACTATTGA
CATTTACCGGGGCTTCCATTCAAAGCTTCTAACACTTCTACTTCTGACCTTCCAGCAGCGGGCAGGTGTCAGACTATACATTGTGGTACCACATAGCAGA
GTCCTGTGTTTTTAATAAGCAGTCACTACCCCCGAGTATGTGCCGCTTGCCTAATCAAAACATAGGAGACCACCCCTCCTCCAGAAGTTACGGGGCCATT
TCGCCGCACTCCTTCGACATGTTTCTCTCAAGCACCCTAATATACTCTACTTGTTCACCTGCGTCTGTTTGGGGTATGGCCAGTTCTCCTTCCCAATTCC
AATTTTTTTTTCCTGGAAGTTTCAACCTTGATGACTATGACAATAGTCGCGACTATAAAAAGACTCGTGATAATAGCAAGGCGGTACACTCTGCTCTCTC
GTGACCCCTAGTCTAATCAAAAGACTAAAGGCCCCTTAGGACACCACACTACGATGAGAGTTTTGCCTTTTGAAGCGCTAGTCGCATAGGGCCATGTTAT
GTGGGATAGTTGAAACACACAACAATGATTGATTGGGTTGGAATACAGTGAGACTAGCATCCTAGTTGTAGATATGTTGCGTGATGATTTGTCTTCTATA
TATGAACTGAAATTCACGAAGTTTGATACTGTAAGTTTGAACAGAAATTATGTTAAATTGATAAAAGTGAATGGAAATTGGTTTCAATACTGATTATTGG
ATCGAAAAAATTATTAGGTATGCTGGATTTAGGTTGGTTTAAAGAGCATTTTGTGATTTGTTTGGCACTGAGATTTAATCTAGTTGGTAGGCCCTTGCAT
TGGCTTTTTGTTGGTATTGTTAAACCGTGTGGAGATACTGAAAAAGTAAAGGAAATTAGATGATGGCAATGAAAGTGAATGTGTGTCAGAGGCAGGAGAT
ATTCGGGATCGGGGCTCCTCACAGAAACAGGCACAGTGAGAGTGGCAGCATCCACTTGTTTCCTTGAGAGGGCATTCAGCTCCAATCCTATGGGTTCTGG
GGTCGTGACCTTGCTGCATCCAAAACAATTTCGCCTGTTTCTCCCTTGCTTGAGGAAATCATATCTCCTATTTCCAGTGATGCGATCATACATGAGGACA
AAAAGAAAGTGACTTTT