« Back to Malus domestica golden search


Detailed information on CNT30715436


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30142453Malus domestica goldenLolium perenne21.2322.2686.9669reverse complement
CNT3067881Malus domestica goldenLeersia perrieri2017.5786.1565reverse complement
CNT30128643Malus domestica goldenCorymbia citriodora27.6927.5285.5690reverse complement

Expression of CNT30715436

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RMTPTNVYKARPAAHLASSFPPPSHFLSL*

>peptide 2 (42 aa)
SYDSHKCLQGAARGASRILVPPSFPLSFLVVVTCCYSPIPTI*

>peptide 3 (33 aa)
MSQRPNVPHCSSIAFARHSHLLITSDMNPNWSS*

>peptide 4 (84 aa)
MFTRRGPRRISHPRSPLLPTFFPCSCYLLLLSNSHYISTASTPSPSNSTIRTHFYLHTAYVSEAQRPSLLLHCLCPPLPPLDHQ*

Sequence

>CNT30715436
GTCGTATGACTCCCACAAATGTTTACAAGGCGCGGCCCGCGGCGCATCTCGCATCCTCGTTCCCCCCTCCTTCCCACTTTCTTTCCTTGTAGTTGTTACT
TGTTGCTACTCTCCAATTCCCACTATATAAGTACAGCCTCTACTCCCTCACCCTCCAACTCAACCATTCGGACACATTTCTACTTACATACAGCATATGT
CTCAGAGGCCCAACGTCCCTCACTGCTCCTCCATTGCCTTTGCCCGCCACTCCCACCTCTTGATCACCAGTGACATGAACCCTAATTGGTCCTCCTGAAA
GCCCTTCGATTTTTTCCCCCAATTC