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Detailed information on CNT30715065


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 1e-179

BLAST vs NONCODE:
NONGMAT001767, E-value = 8e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Malus domestica goldenNymphaea colorata18.9931.3680.37270forward
CNT30532478Malus domestica goldenEucalyptus grandis11.3238.780.75161forward
CNT30516669Malus domestica goldenJuglans regia29.445.1487.08418forward
CNT30377107Malus domestica goldenArabidopsis thaliana18.7856.4582.4267forward
CNT30282683Malus domestica goldenChenopodium quinoa31.2248.2181.53444forward
CNT3021611Malus domestica goldenCitrullus lanatus25.7492.1985.25366forward
CNT3070085Malus domestica goldenQuercus suber25.8156.2981.47367forward
CNT30380803Malus domestica goldenManihot esculenta21.3164.6182.84303forward
CNT30526368Malus domestica goldenPhaseolus vulgaris26.7223.8780.26380forward
CNT30708912Malus domestica goldenGlycine max28.6946.8481.62408forward
CNT3046375Malus domestica goldenPrunus dulcis49.0910094.13698forward
CNT3098188Malus domestica goldenSolanum tuberosum14.1440.5281.59201forward
CNT30305192Malus domestica goldenTriticum aestivum7.9520.8584.96113forward
CNT30223144Malus domestica goldenHordeum vulgare4.2928.7786.8961forward
CNT30563752Malus domestica goldenActinidia chinensis23.8469.6184.96339forward
CNT3085325Malus domestica goldenVigna radiata26.2352.7683.11373forward
CNT30542456Malus domestica goldenBrassica napus8.2327.0884.62117forward
CNT30552704Malus domestica goldenOryza glaberrima4.3621.3887.162forward
CNT30313019Malus domestica goldenCamelina sativa23.3554.2579.22332forward
CNT3080335Malus domestica goldenBrassica juncea15.6139.1581.08222forward
CNT30263082Malus domestica goldenBrassica rapa2397.6181.35327forward
CNT30475173Malus domestica goldenSaccharum spontaneum45.1586.4179.6642forward
CNT30654455Malus domestica goldenRosa chinensis26.0981.1890.3371forward
CNT30624536Malus domestica goldenDaucus carota29.2529.6183.65416forward
CNT30688530Malus domestica goldenTriticum urartu16.9556.8479.67241forward
CNT30478285Malus domestica goldenArabidopsis halleri15.463.2981.28219forward
CNT30369978Malus domestica goldenOryza glumipatula10.920.6483.23155forward
CNT30154060Malus domestica goldenPrunus persica47.7567.6392.78679forward
CNT30704833Malus domestica goldenPrunus avium38.3376.3393.03545forward
CNT3022395Malus domestica goldenPopulus trichocarpa22.577.8687.5320forward
CNT30119031Malus domestica goldenCitrus clementina19.0635.788.93271forward
CNT3038372Malus domestica goldenCucumis melo48.736383.12693forward
CNT30576776Malus domestica goldenOryza barthii10.0640.482.52143forward
CNT3050211Malus domestica goldenCucumis sativus25.5396.5483.75363forward

Expression of CNT30715065

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MGDLKETFCTGSPSMDNTLWDPFSIKIGEFLHQMVVLKQ

>peptide 2 (36 aa)
MRTLGSINWELQIVRAKTVPLSIRIGEDSSLEQLII*

>peptide 3 (36 aa)
MKFHVVCLPGLTDKSIGVNTRPFHVPVILWNSQVIQ*

>peptide 4 (32 aa)
MPYFTEVTRLPGLVKYEVFVTGAVTRDTTAYF*

>peptide 5 (58 aa)
MVGEEVKDPPILLDVGLRVRFESMDHVREFHSITDKKDGEIVSHQVKITLFKKNKVTA*

>peptide 6 (50 aa)
MAGQKASCSFSAKKLSMFLFSTKRPTGCRGRISSGQVLVTSSGSKSNLSS*

>peptide 7 (55 aa)
MYKQAKTLGPNDFQELVNNNVTKKSTICRIKTIFKKEKKSMNAIFHGSHKTTGFS*

>peptide 8 (65 aa)
MCRLSGWWEKKSRILQFSWMWDLGFGLRAWTMSGNFIPSRTKKTGKLFPTKSKLPCLRKIKSRHE*

Sequence

>CNT30715065
CCTCCTCATCCCTATGCATGAAATTCATAAATCCTTCATGGTGATTGTTGTGTGATGAGAACACTTGGGAGCATTAACTGGGAGCTGCAAATAGTTCGGG
CCAAGACGGTGCCTCTGAGTATCAGAATAGGAGAAGATTCGAGTTTGGAGCAACTTATCATCTGAATAGTAGACACCAGGGACAACAATGGCAGGGCAGA
AAGCAAGTTGTTCATTCTCTGCAAAGAAGTTATCAATGTTCTTATTCAGTACCAAACGGCCAACCGGCTGCAGGGGAAGAATATCTTCAGGCCAGGTCTT
AGTAACATCAAGTGGGTCAAAGTCAAATCTGTCTTCTTGATCAGGATCAATTGTCTGAATAAAAAGTTTCCACTCCGGGTAGTTGCCAGCTGCGATGGAG
TCATAGAGATCCTTGGTAGCGTGGCTGTGATTAGCTCCTCCAACCTTAATAGCCTCATCCTCCAACAAACACTTGACTCCACAAGTGGGTTTCCAATGAA
ATTTCACGTAGTGTGCCTTCCCGGCCTTACTGATAAGAGTATAGGTGTTAACACCAGACCCTTCCATGTGCCTGTAATCTTGTGGAACTCCCAGGTCATC
CAATAGGAAGGTGAACATGTGCAGGCTTTCTGGATGGTGGGAGAAGAAGTCAAGGATCCTCCAATTCTCTTGGATGTGGGACTTAGGGTTCGGTTTGAGA
GCATGGACCATGTCCGGGAATTTCATTCCATCACGGACAAAAAAGACGGGGAAATTGTTTCCCACCAAGTCAAAATTACCCTGTTTAAGAAAAATAAAGT
CACGGCATGAGTAAAGAAAGGAATGCATGTATAAACAAGCAAAAACATTAGGACCAAATGATTTCCAAGAGTTAGTTAATAATAATGTTACAAAGAAATC
AACAATCTGTAGAATCAAAACAATATTTAAAAAAGAAAAGAAAAGCATGAATGCCATATTTCACGGAAGTCACAAGACTACCGGGTTTAGTTAAATATGA
AGTATTTGTCACTGGAGCTGTGACTCGAGATACCACTGCATATTTTTAACTATAAATATGCTGTTGAATATAATTATGATCATCGACGTGTCAAAACTCA
ACCATCATTATCCAGAGGTCATAAAACATCAATAAGCCATTGAAACGTCACCTCTCTGGTGTAAAACTTCACTGCAAAACCACGAGGATCCCTCAGGGTT
TCAGGGCTGCCACGCTCATGGATAACAGTGGAGAAACGCACAATGACAGGTGTCTGAACTCCAGGGGCTCGAAGGAAGTCAGCACATGAAAGGTGAGAAA
TATCATGGGTGACCTCAAAGAAACCTTTTGCACTGGCTCCCCTAGCATGGACAACACGCTCTGGGATCCGTTCTCTATCAAAATTGGCGAGTTTCTCCAC
CAGATGGTAGTCCTCAAGCAGA