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Detailed information on CNT30714885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Malus domestica goldenOryza sativa36.3455.8488.14177forward
CNT30522907Malus domestica goldenSetaria italica25.6722.1287.2125forward
CNT30536141Malus domestica goldenEucalyptus grandis39.2252.6286.39191forward
CNT3044269Malus domestica goldenPrunus dulcis29.7724.2984.14145forward
CNT30181670Malus domestica goldenSecale cereale27.7247.284.44135forward
CNT3082886Malus domestica goldenBrassica juncea25.8749.0386.51126forward
CNT30230974Malus domestica goldenAnanas comosus32.0324.3892.31156forward
CNT30720826Malus domestica goldenTriticum spelta41.2733.7281.59201forward
CNT30597158Malus domestica goldenOryza meridionalis42.0929.8886.83205forward
CNT30355705Malus domestica goldenLactuca sativa42.0956.1681.46205forward
CNT30371509Malus domestica goldenOryza glumipatula36.3430.5784.75177forward
CNT30105031Malus domestica goldenOryza longistaminata42.0926.5985.85205forward
CNT3023479Malus domestica goldenPopulus trichocarpa31.8343.1884.52155forward
CNT30149302Malus domestica goldenBrachypodium distachyon36.1429.4384.66176forward

Expression of CNT30714885

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MISSAVNLVPLSLSAELGDDDLGGVDADIDGGPVHLLSGDPLDVDDPLPAVHLDDLALAALIGPTHDLDLVVLAHRHRSDIVLGAE

>peptide 2 (40 aa)
AQRNCSEKNYQQLQNIIYHIKNSTNPFMSQIEDQIKRQIH*

>peptide 3 (43 aa)
MTTLEGLMPTLTVDPFTFSRVIRSMWMTHFRRYTWTTLPSRPL*

Sequence

>CNT30714885
TGCACAACGAAATTGTAGTGAAAAAAATTACCAACAACTTCAAAATATAATATATCATATCAAAAACAGCACAAATCCGTTCATGTCTCAGATCGAAGAT
CAGATTAAACGCCAAATCCATTAAAGCATAATCAAAACTAAAGTGCTTAACTTGACAGTCGCTAATTTCATTTCAATAACAAAAAACACGAACCCAAATG
AAATCGATCGAAATCAATCGACGTTCTGCATGATATCCTCTGCGGTGAACTTGGTGCCCTTGTCCTTGTCAGCGGAGCTTGGTGATGACGACCTTGGAGG
GGTTGATGCCGACATTGACGGTGGACCCGTTCACCTTCTCTCGGGTGATCCGCTCGATGTGGATGACCCACTTCCGGCGGTACACCTGGACGACCTTGCC
CTCGCGGCCCTTATAGGTCCCACGCACGACCTGGACCTCGTCGTCCTTGCGCACCGGCATCGATCGGACATTGTACTTGGAGCGGAG