« Back to Malus domestica golden search


Detailed information on CNT30714749


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677187Malus domestica goldenSetaria viridis25.4320.4286.4459forward
CNT30524209Malus domestica goldenSetaria italica71.98983.23167forward
CNT30709157Malus domestica goldenGlycine max87.0732.0185.64202forward
CNT30558965Malus domestica goldenActinidia chinensis81.0355.9583.51188forward
CNT30237993Malus domestica goldenBrassica oleracea61.2128.8683.1142forward
CNT30248419Malus domestica goldenAvena sativa82.7642.3880.73192forward
CNT30650801Malus domestica goldenRosa chinensis78.4513.8586.81182forward
CNT30365509Malus domestica goldenSorghum bicolor78.4526.6582.97182forward
CNT30620724Malus domestica goldenCajanus cajan71.9826.0188.62167forward
CNT30117918Malus domestica goldenOryza nivara50.8613.1385.59118forward

Expression of CNT30714749

Peptides detected in this lncRNA

>peptide 1 (76 aa)
VGQVTTRGKVQSHDAVMGLEDGGVCGEVGGRTGVGLNVDAPFGGVEVEGLEGARAAHVLDLVDELVASGAAEGLNDG

Sequence

>CNT30714749
CGTGGGTCAGGTGACCACCAGAGGGAAGGTCCAATCCCATGATGCGGTCATGGGGCTCGAGGACGGCGGTGTATGCGGCGAAGTTGGCGGGAGAACCGGA
GTAGGGCTGAACGTTGACGCCCCATTTGGCGGCGTCGAGGTGGAAGGCCTGGAGGGCGCGCGAGCGGCACATGTTCTCGATCTCGTCGATGAACTCGTTG
CCTCCGGCGCTGCCGAGGGCCTCAATGACGGC