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Detailed information on CNT30714122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q49KT9|YCF68_EUCGG, E-value = 2e-22

BLAST vs NONCODE:
NONMEST001876, E-value = 3e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693436Malus domestica goldenOryza sativa28.332.2486.32117forward
CNT30641762Malus domestica goldenNymphaea colorata29.543.5190.16122forward
CNT30533065Malus domestica goldenEucalyptus grandis41.1622.4994.12170forward
CNT30403753Malus domestica goldenBeta vulgaris25.914.9985.98107reverse complement
CNT30712184Malus domestica goldenGlycine max5437.1793.72223forward
CNT30637537Malus domestica goldenCapsicum annuum53.5136.7783.26221forward
CNT30177674Malus domestica goldenSecale cereale22.034.4896.791forward
CNT30508578Malus domestica goldenSolanum lycopersicum13.0820.1592.5954reverse complement
CNT30627901Malus domestica goldenDaucus carota54.9619.494.71227forward
CNT30720008Malus domestica goldenTriticum spelta22.0337.4596.791reverse complement
CNT30362263Malus domestica goldenSorghum bicolor54.9626.2490.75227forward
CNT30595932Malus domestica goldenOryza meridionalis31.729.8696.18131forward
CNT3057391Malus domestica goldenAmborella trichopoda30.512.4986.51126forward
CNT30318962Malus domestica goldenAsparagus officinalis54.9610.8993.83227forward
CNT30119130Malus domestica goldenCitrus clementina28.3312.1788.03117forward
CNT30148380Malus domestica goldenBrachypodium distachyon55.9317.0490.48231forward
CNT30575742Malus domestica goldenOryza barthii55.9351.5688.31231forward
CNT30585636Malus domestica goldenEchinochloa crusgalli29.32.1186.78121forward
CNT30726606Malus domestica goldenLupinus angustifolius54.9619.2594.71227forward

Expression of CNT30714122

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIHISGLGADEHIELSMWLRSLTAQAQRHNYQGRA

>peptide 2 (56 aa)
VLFTKLGSFGVIVDGCLAIPSISTTEPDMRVSSHPAPRELNKKKYTVNNIWNRGIL*

Sequence

>CNT30714122
GTGTTGTTTACGAAATTAGGTTCTTTTGGGGTTATAGTTGATGGTTGTTTAGCAATTCCATCCATCTCTACTACAGAACCGGACATGAGAGTTTCTTCTC
ATCCAGCTCCTCGCGAATTAAACAAAAAAAAATACACAGTTAATAATATATGGAATCGTGGGATTCTTTGAAATTTGATCTAATCGAATAGAAAGTTGGA
TCTACATTGGATCTCACCTGAATCACCCCATCTATCGTCTTGAGTAGAAGTTTGGTTTCAAACCTCGGTTCGAACAGGAAAAGTACGCCATGCTAATGTG
CCTTGGATGATCCACATCTCAGGGTTAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGATCCCTCACAGCCCAGGCACAACGACACAATTATC
AGGGGCGCGCTCG