Detailed information on CNT3071407


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FIC9|GL115_ARATH, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315015Quercus suberCorylus avellana24.2619.6687.7257forward
CNT30517589Quercus suberJuglans regia79.1535.0385.48186forward
CNT30382100Quercus suberManihot esculenta68.9432.0282.72162forward
CNT30631627Quercus suberVigna unguiculata22.9810.490.7454forward
CNT3045720Quercus suberPrunus dulcis77.0230.1780.11181forward
CNT30638659Quercus suberCapsicum annuum50.6417.9881.51119forward
CNT3090155Quercus suberSolanum tuberosum57.0216.7782.09134forward
CNT30717911Quercus suberMalus domestica golden69.3620.0282.21163forward
CNT30623807Quercus suberDaucus carota20.856.4191.8449forward
CNT30155140Quercus suberPrunus persica45.9634.8483.33108forward
CNT30573105Quercus suberVitis vinifera76.629.7582.22180forward
CNT30706384Quercus suberPrunus avium77.0228.4181.22181forward
CNT3031606Quercus suberTheobroma cacao79.1540.8884.41186forward
CNT3027612Quercus suberPopulus trichocarpa79.1510.9580.65186forward

Expression of CNT3071407

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PLSSWKALMRTSGLIGGTDPKTAFAMVITPGFWLLRPAKARASVFPMLNWK*

Sequence

>CNT3071407
CACCCTTGTCTAGTTGGAAGGCCTTGATGAGAACATCAGGATTGATAGGAGGAACAGATCCAAAGACCGCGTTTGCAATGGTGATCACCCCAGGATTTTG
GCTGCTGAGACCAGCAAAGGCAAGAGCATCAGTCTTTCCCATGTTGAATTGGAAGTGAATGAGACCAATTGGGAATACAAAGACATCTCCCTTGATTTTG
GCTGCTGAGACCAGCAAAGGCAAGACCAATAGTCT