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Detailed information on CNT30713835


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONATHT001255, E-value = 9e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3047566Malus domestica goldenPrunus dulcis31.3811.9291.3230reverse complement
CNT30588877Malus domestica goldenMusa acuminata16.143.2291.53118forward
CNT30655373Malus domestica goldenRosa chinensis32.335.6686.5237reverse complement
CNT30114189Malus domestica goldenFicus carica31.245.8186.46229reverse complement

Expression of CNT30713835

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VTIQINQDSLKPHVQSRFHTIKMVPNDSLATL*

>peptide 2 (43 aa)
MFNLDFTQSKWSQMIVWRLCSLYTHQSDYKVKTSQARVPGIHR*

Sequence

>CNT30713835
CGTCACCATACAAATAAACCAAGACAGTTTGAAACCGCATGTTCAATCTAGATTTCACACAATCAAAATGGTCCCAAATGATAGTCTGGCGACTTTGTAG
TTTATATACACATCAAAGTGATTACAAGGTGAAAACATCCCAAGCGCGAGTCCCTGGTATACATAGATAGTTCAGCGTCACGCAATTTGTAATTTTTTCA
AGACTCTTAACAGACCAACCCCTCAAAACACTAAAGTATAGTCATTAACACATAAGACGCCATTTCGATGAAAACAAAATCTCCACGGACCTAAGTATTC
ATAATTTACCGACTATTATTACATCCGACACTCGCAGTTGACAGGTCAGGGGTTTTTTCTCCCTAAAGTTCGATTCTCGAATTGTTTCTCACTAACATTA
ACGGCCACGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGAGTATTGAGCGGGAGGTTACACCTATGGGTTAGGTCTCCACCAATAGAGGGCA
TAGGGGAAGAAGCACTACTCCTAGGAATCAACACACGAAAACTTTGTTATAAATTATCCCTTTTCCTTATCAGGATCGGGACTAACAAGAATGGTTGGGA
CAACAAACATCCATCTCGTTCGTTTTTCACTAACATTAACGGCCAGGGACTACACTAATCAAGCTTAACTTTGATTTAGTACGAAAAGCTTTCTCCTTGA
AACAAAAGGAAACTCAATTTCATAGTTAAATTT