Detailed information on CNT3071371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693909Quercus suberOryza sativa41.818.4781.67120forward
CNT30640134Quercus suberNymphaea colorata80.1433.4382.61230forward
CNT30547471Quercus suberIpomoea triloba30.3116.0885.0687forward
CNT30512774Quercus suberJuglans regia101.3923.3286.6291forward
CNT30405832Quercus suberBeta vulgaris86.0630.887.45247forward
CNT30636551Quercus suberCapsicum annuum77.3533.6487.84222forward
CNT30192963Quercus suberSecale cereale83.2844.7685.77239forward
CNT30224139Quercus suberHordeum vulgare47.7445.0786.86137forward
CNT30543621Quercus suberBrassica napus52.9659.3888.16152forward
CNT30510528Quercus suberSolanum lycopersicum80.4917.9388.74231forward
CNT30143750Quercus suberMedicago truncatula62.3723.3783.8179forward
CNT30441049Quercus suberAegilops tauschii39.3729.8989.38113forward
CNT30312884Quercus suberCamelina sativa80.1422.7586.96230forward
CNT30263621Quercus suberBrassica rapa101.0524.5184.83290forward
CNT30612508Quercus suberArabis alpina10011.3183.62287forward
CNT30445994Quercus suberSaccharum spontaneum86.7617.4986.35249forward
CNT301916Quercus suberZea mays84.3259.4685.12242forward
CNT30212259Quercus suberHelianthus annuus70.7330.4385.22203forward
CNT30716232Quercus suberMalus domestica golden100.3521.7288.19288forward
CNT30722731Quercus suberTriticum spelta36.2420.3585.58104forward
CNT30361348Quercus suberSorghum bicolor86.4147.1586.29248forward
CNT30706279Quercus suberPrunus avium101.3947.9488.32291forward
CNT3054398Quercus suberAmborella trichopoda49.8320.8583.92143forward
CNT30119815Quercus suberCitrus clementina47.7429.8586.13137forward
CNT30557952Quercus suberPanicum hallii87.830.9288.49252forward

Expression of CNT3071371

Peptides detected in this lncRNA

>peptide 1 (54 aa)
VHNRTERNHACSRASVLSCPLLGSRVKEVLTPEALHHLGLINSKLGSIHLSKIG*

>peptide 2 (73 aa)
FITELNETTLAAEPVFLVVHFLVAGSKKFSPQRRSIILDSSTPNLEAYILAKLVRVKAQPCKPAEKATVPFSG*

Sequence

>CNT3071371
GGTTCATAACAGAACTGAACGAAACCACGCTTGCAGCAGAGCCAGTGTTCTTAGTTGTCCACTTCTTGGTAGCAGGGTCAAAGAAGTTCTCACCCCAGAG
GCGCTCCATCATCTTGGACTCATCAACTCCAAACTTGGAAGCATACATCTTAGCAAAATTGGTTAGAGTAAAAGCCCAGCCGTGCAAACCAGCAGAGAAA
GCAACAGTTCCTTTCTCGGGGTAGACCTGGACATCACCAAGGAGGGGATCTTCATAGGTAGCCATAATGACATTAGCATTCTCAATA