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Detailed information on CNT30713695


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Malus domestica goldenQuercus lobata39.2533.7889.83177forward
CNT30375121Malus domestica goldenArabidopsis thaliana28.3817.5181.25128forward
CNT30277485Malus domestica goldenChenopodium quinoa45.6824.1584.47206forward
CNT3021247Malus domestica goldenCitrullus lanatus45.6822.3783.98206forward
CNT3068683Malus domestica goldenQuercus suber45.0141.2688.18203forward
CNT3066796Malus domestica goldenLeersia perrieri32.5937.7983.67147forward
CNT30363710Malus domestica goldenSorghum bicolor35.2527.0982.39159forward
CNT3064271Malus domestica goldenSelaginella moellendorffii29.0523.8288.55131forward

Expression of CNT30713695

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSSNLGFPKWCITFSFLPVKKLSTTITLVASLNQTVHKMRSDEP

>peptide 2 (34 aa)
LTIRQLSSGHSAMMILANWSGGITLVKPKRRGDV*

>peptide 3 (32 aa)
VDHQAIVKRSFCHDDIGQLVRRDHSRQAQETR*

>peptide 4 (75 aa)
MTASLIDWGGRASEMIDLVDLEQKRLNDVVPDELEPRVSEMVHHILLPSGEEIVHNDHAGRLAQSDGPQDAIRRTR

Sequence

>CNT30713695
GTTGACCATCAGGCAATTGTCAAGCGGTCATTCTGCCATGATGATATTGGCCAATTGGTCAGGCGGGATCACTCTCGTCAAGCCCAAGAGACGAGGTGAT
GTGTAACCGCCTGACCAACTGACAAAGACACTGTTCTGTACCCTGGCCAATTAATCAAGGAGTGTTGGCCACCTGACCAATTATCGACCGCCTCAGTCAA
TTGGCCGCAACAGCAAGTCGGCCATGACCGCTTCACTAATTGATTGGGGAGGCAGGGCAAGCGAGATGATAGATCTGGTCGACCTCGAGCAGAAGAGGCT
CAACGACGTCGTGCCGGATGAGCTCGAACCTCGGGTTTCCGAAATGGTGCATCACATTCTCCTTCCTTCCGGTGAAGAAATTGTCCACAACGATCACGCT
GGTCGCCTCGCTCAATCAGACGGTCCACAAGATGCGATCCGACGAACCCGG