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Detailed information on CNT30713469


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QD89|PSAA_CUCSA, E-value = 1e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Malus domestica goldenOryza sativa87.27.8489.68436forward
CNT30675574Malus domestica goldenSetaria viridis32.670.2687.12163forward
CNT30526549Malus domestica goldenPhaseolus vulgaris4131.0692.2205forward
CNT30201935Malus domestica goldenPisum sativum96.828.492.56484forward
CNT30224362Malus domestica goldenHordeum vulgare65.820.7290.58329forward
CNT301761Malus domestica goldenZea mays89.67.989.73448forward
CNT30627902Malus domestica goldenDaucus carota89.25093.72446forward
CNT30688863Malus domestica goldenTriticum urartu8921.1689.66445forward
CNT30362291Malus domestica goldenSorghum bicolor33.842.5786.98169forward
CNT30430934Malus domestica goldenPapaver somniferum96.87.4192.15484forward
CNT3057361Malus domestica goldenAmborella trichopoda908.9487.78450forward
CNT30147977Malus domestica goldenBrachypodium distachyon39.416.0887.82197forward
CNT30585620Malus domestica goldenEchinochloa crusgalli89.68.7389.51448forward
CNT30497263Malus domestica goldenDigitaria exilis37.626.6788.83188forward
CNT30333024Malus domestica goldenCynara cardunculus91.244.7592.76456forward

Expression of CNT30713469

Peptides detected in this lncRNA

>peptide 1 (31 aa)
RCSLLLHQGPLRWVLKHGCFVSIEQRRVVIV*

>peptide 2 (42 aa)
MNIQTKNCESLKNIHTQLRCDMIASRCLRTRSNRSLYRVVGS*

Sequence

>CNT30713469
TCAGATGCAGCCTGTTGTTGCACCAGGGGCCGTTGCGTTGGGTGCTAAAGCATGGGTGTTTTGTATCCATTGAGCAAAGACGGGTTGTAATTGTATAGCG
GTATCTGAAAACATATCTTGCGGGCGCCCTAAAGCGCTCATAGTATCATTATGAATATACAAACCAAAAACTGTGAAAGCCTAAAAAATATACATACCCA
GTTAAGATGTGATATGATTGCATCGCGATGCCTAAGGACACGATCTAATAGATCGTTGTATCGAGTAGTTGGATCATAGTCTCTTACCATAAAAATGGCT
GCATGCGCAGCAGCACCAACTATGAGAAATCCACCAATCCACATGTGATGTGTGAACAATGAAAGTTGTGTACCATAATCGGTAGCTAGATATGGATAAG
GAGACATCAAATACATATGGTGAGCTACAACAATGGTTAAAGATCCTAACATAGCTAGATTAATAGATAATTGAGCATGTCATGACGTTGTTAGGACCTC