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Detailed information on CNT30712870


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 1e-37

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Glycine maxSetaria viridis13.9664.895.69232forward
CNT30524649Glycine maxSetaria italica26.0513.1495.61433forward
CNT30640799Glycine maxNymphaea colorata25.9356.6487.94431forward
CNT30550219Glycine maxIpomoea triloba44.6517.0997.84742forward
CNT30619000Glycine maxSesamum indicum45.0124.4896.79748forward
CNT30730372Glycine maxCorchorus capsularis50.1243.0595.92833forward
CNT30632345Glycine maxVigna unguiculata47.2929.5899.75786reverse complement
CNT30490117Glycine maxOlea europaea51.0269.4596.11848forward
CNT30505422Glycine maxNicotiana attenuata44.6527.8897.71742forward
CNT3046714Glycine maxPrunus dulcis12.6498.5988.57210reverse complement
CNT30157603Glycine maxPistacia vera50.3687.7491.52837forward
CNT3092080Glycine maxSolanum tuberosum20.1657.4696.42335forward
CNT30181978Glycine maxSecale cereale26.0548.9895.61433reverse complement
CNT30299493Glycine maxTriticum aestivum26.0520.195.38433forward
CNT30221603Glycine maxHordeum vulgare25.9935.8594.68432forward
CNT30385334Glycine maxTriticum turgidum26.0514.4495.61433forward
CNT30569655Glycine maxActinidia chinensis45.2521.1294.41752forward
CNT30592527Glycine maxMusa acuminata11.3756.5998.41189forward
CNT30543268Glycine maxBrassica napus44.5232.2494.73740forward
CNT30147386Glycine maxMedicago truncatula45.0748.5798.93749forward
CNT30435868Glycine maxAegilops tauschii26.0531.0695.61433forward
CNT30242955Glycine maxAvena sativa18.7733.4497.12312forward
CNT30670388Glycine maxTriticum dicoccoides26.0515.4494.92433forward
CNT3082633Glycine maxBrassica juncea13.4267.7895.52223forward
CNT30600961Glycine maxFraxinus excelsior4.8123.3288.7580forward
CNT30140120Glycine maxLolium perenne26.0513.0495.61433forward
CNT30605266Glycine maxGossypium raimondii50.640.1897.5841forward
CNT30216578Glycine maxKalanchoe fedtschenkoi45.3722.6496.82754forward
CNT30655407Glycine maxRosa chinensis50.2424.9896.77835forward
CNT30207637Glycine maxHelianthus annuus44.8338.0996.64745forward
CNT30628241Glycine maxDaucus carota44.7727.5698.12744reverse complement
CNT30689135Glycine maxTriticum urartu26.0543.6595.38433reverse complement
CNT30364089Glycine maxSorghum bicolor12.2744.9391.18204forward
CNT30595572Glycine maxOryza meridionalis16.3731.7495.22272forward
CNT30359520Glycine maxLactuca sativa44.8329.2697.72745reverse complement
CNT30434643Glycine maxPapaver somniferum22.3249.8795.42371forward
CNT30571858Glycine maxVitis vinifera45.1321.6497.6750reverse complement
CNT3057903Glycine maxAmborella trichopoda43.530.1892.67723reverse complement
CNT30108930Glycine maxOryza longistaminata26.0518.595.61433forward
CNT3038420Glycine maxCucumis melo49.7657.9194.56827forward
CNT30331546Glycine maxDioscorea rotundata15.461.3993.36256reverse complement
CNT30113381Glycine maxFicus carica26.9100.2296.64447reverse complement
CNT30335929Glycine maxCynara cardunculus8.337.496.38138forward
CNT30725732Glycine maxLupinus angustifolius17.2163.4198.6286forward

Expression of CNT30712870

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

>peptide 2 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30712870
TTGTCCTTCTATTAGTGGTGGTATCCTAAGATTCCGGTTTAGAAATGATCGATTTCTGTAACTAGAAATTTCATAAGAGAAGAAAGATCATAGCGTAGAA
AAGAAAGGCCTTTCCTTCACGGGCTTACTTAGTGCTTGTGCTAAGGTTTGAGCTCGACCCAAACAACGACTAACGAGCCCCTATAAGAGAAAGCCTTGGT
TAAGTAAAGCGCGTTAGCTCTTTTAAGTTAAGGCGCGCATCCTCTTGCTGGGAGAGGATAAATCGTTTTGATTCGAGGCGGATCCCTTTTTTGTTTGCCT
TTACGAGTTGAGTCAAAAAAAATCTCTCGTTATTTAAGGTAAGGTTATAACACTCTAATGACAAAGCGTCCGCTCACTGGCCCTTTGAATCTGGAGATGT
AGTTGCGTGTACTGATTCTCATCGAGATTGGGTTGGTCTTCAGTGTACCGCTTGTGTAGCCTATGCGAAGCGAACAAGCAAGGGATTGAGGCGAAAGCCG
CGTTCGCGCATTCGTTTGTTTGGGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCA
TGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGCGGCTAGTCTGCGCTCTTTGGACTTTTAAAACTTAGCGAAC
TGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGTTTGAAGAAAAACAAACACGAAGC
TTCGTTTCTCTTTCGAGTATGATAAATTCCTCAGCAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAA
ACCAGCAAGCCCCTTTCATTGAAAGGGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCC
ATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGA
CCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAG
CTTAGAGCCTTTACTTGATATTTAGTAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACAGCGGCTTAAGCCA
TTAGGTGTAGGCGCCTTTCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCG
AAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCC
GAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTAGGGTGCTAAGATCCAAAGTCGAGG