CANTATAdb - search

Detailed information on CNT30712823

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-160

BLAST vs NONCODE:
NONTPRT002153, E-value = 6e-103

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30641434	Glycine max	Nymphaea colorata	76.53	63.74	85.63	675	forward
CNT30526024	Glycine max	Phaseolus vulgaris	76.76	51.17	88.04	677	forward
CNT30169882	Glycine max	Pistacia vera	77.1	32.96	86.18	680	forward
CNT30652979	Glycine max	Rosa chinensis	77.44	62.37	86.38	683	forward
CNT30327242	Glycine max	Asparagus officinalis	77.1	68.34	85.29	680	forward

Expression of CNT30712823

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTK*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVSVLTKICMPPRRRRTR*

>peptide 3 (49 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICICRVNNH

Sequence

>CNT30712823
ATTTCACACATTCATAACAAACGTAGGTGGGATATTAGAGTACTATTATTAATGGGACACAATTGAGTTCAACACAAACCGAACTTATTTTCAAGGGACA
TTATTACAGACCCATTAAACATCAAAGTTCTTCAAATGTTTTGGGAACACATCCAACATTACACAACGAGCTTAAAACCCCCCACGGAGACGGAGGACAA
GGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCCGGTGGGAT
GCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATAGTCTTACCCGTAAGAGTCTTCACGAAAATC
TGCATACCACCACGAAGACGCAACACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGA
AGATGAGACGTTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTTTCAACCTCTAGGGTTATGGT
CTTGCCGGTGAGTGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGGACGAGGTGAAGAGTACTCTCCTTCTGAATGTTGTAGTCAGCAAGGGTA
CGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGT
CAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTGTCGAGTCAACAATCACAG