CANTATAdb - search

Detailed information on CNT30712768

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-159

BLAST vs NONCODE:
NONTPRT002153, E-value = 3e-105

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30201346	Glycine max	Pisum sativum	71.18	67.73	87.41	699	forward
CNT30506305	Glycine max	Nicotiana attenuata	69.76	72.64	85.55	685	forward
CNT30562217	Glycine max	Actinidia chinensis	69.65	67.92	86.7	684	forward
CNT30171036	Glycine max	Trifolium pratense	70.88	44.44	86.21	696	forward
CNT30312527	Glycine max	Camelina sativa	69.25	80.57	86.18	680	forward
CNT30623089	Glycine max	Daucus carota	69.65	39.61	86.26	684	forward
CNT30111740	Glycine max	Ficus carica	70.37	59.47	85.09	691	forward

Expression of CNT30712768

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICICRVNNHR*

>peptide 2 (31 aa)
MVSELSTSRVIVLPVRVLTKICMPPRRRRTR*

>peptide 3 (40 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTKWRVDSFWML*

Sequence

>CNT30712768
TTAAAACAACACGATATGACAATTAATCATTTCATATTTCACACATTCATAACAAACGTAGGTGGGATATTAGAGTACTATTATTAATGGGACACAATTG
AGTTCAACACAAACCGAACTTATTTTCAAGGGACATTATTACAGACCCATTAAACATCAAAGTTCTTCAAATGTTTTGGGAACACATCCAACATTACACA
ACGAGCTTAAAACCCCCCACGGAGACGGAGGACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTTCCATCCTCGAGCTGCTTG
CCAGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGG
TAATAGTCTTACCCGTAAGAGTCTTCACGAAAATCTGCATACCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGC
AAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCG
ATGGTGTCGGAGCTTTCGACTTCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGGACGAGGTGAAGAG
TACTCTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTT
GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTGT
CGAGTCAACAATCACAGATAAATCAGAATCAAAATCCATTACGTAATCTTAAGTACGGATCTGAAGCAATCTCGTGAAAAAA