« Back to Glycine max search


Detailed information on CNT30712732


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 4e-38

BLAST vs NONCODE:
NONGMAT000950, E-value = 2e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730558Glycine maxCorchorus capsularis46.8269.294.9647forward
CNT30157615Glycine maxPistacia vera47.1188.6991.09651forward
CNT30543279Glycine maxBrassica napus40.0952.1793.14554forward

Expression of CNT30712732

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

>peptide 2 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30712732
CGTAGAAAAGAAAGGCCTTTCCTTCACGGGCTTACTTAGTGCTTGTGCTAAGGTTTGAGCTCGACCCAAACAACGACTAACGAGCCCCTATAAGAGAAAG
CCTTGGTTAAGTAAAGCGCGTTAGCTCTTTTAAGTTAAGGCGCGCATCCTCTTGCTGGGAGAGGATAAATCGTTTTGATTCGAGGCGGATCCCTTTTTTG
TTTGCCTTTACGAGTTGAGTCAAAAAAAATCTCTCGTTATTTAAGGTAAGGTTATAACACTCTAATGACAAAGCGTCCGCTCACTGGCCCTTTGAATCTG
GAGATGTAGTTGCGTGTACTGATTCTCATCGAGATTGGGTTGGTCTTCAGTGTACCGCTTGTGTAGCCTATGCGAAGCGAACAAGCAAGGGATTGAGGCG
AAAGCCGCGTTCGCGCATTCGTTTGTTTGGGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGA
AAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGCGGCTAGTCTGCGCTCTTTGGACTTTTAAAACTT
AGCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGTTTGAAGAAAAACAAAC
ACGAAGCTTCGTTTCTCTTTCGAGTATGATAAATTCCTCAGCAGCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGA
TGGAAAAACCAGCAAGCCCCTTTCATTGAAAGGGCGCAGTGAACTGTAATTGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGAT
GCGAACAATCAGTCGAAGGAGCTTAGAGCCTTTACTTGATATTTAGTAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAA
TGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCCTTTCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGC
AGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATC
GGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCT
TACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTAGGGTGCTAAGATCCAAAGTCGAG