Detailed information on CNT30712649


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 4e-79

BLAST vs NONCODE:
NONGMAT001209, E-value = 9e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514098Glycine maxJuglans regia20.7237.6381.88149forward
CNT30374015Glycine maxArabidopsis thaliana14.8822.8684.11107forward
CNT30382128Glycine maxManihot esculenta13.2124.3685.2695forward
CNT30628528Glycine maxVigna unguiculata28.6523.2295.15206forward
CNT3084586Glycine maxVigna radiata28.6514.4892.72206forward
CNT30146630Glycine maxMedicago truncatula44.5172.7384.38320forward
CNT3066802Glycine maxLeersia perrieri16.5550.2182.35119forward
CNT30322744Glycine maxAsparagus officinalis9.7420.7187.1470forward
CNT30176366Glycine maxVigna angularis28.6543.0194.17206forward

Expression of CNT30712649

Peptides detected in this lncRNA

>peptide 1 (94 aa)
HSGVHGRSREGPTQQNVSADNETNGDGSNNSQITLLGVNGSCVDRVHQTEGHHDLQHQGVANSNSSGESECWNSLRCVTPEQTLTISYYSSLIN*

>peptide 2 (42 aa)
TAGFMAAPEKAPPNKMLAPTMKPMAMGAIIPKLPFLGSMAVA*

>peptide 3 (40 aa)
MPRRKVMLPPTKAPKRANAWAMEAEMRPAGVAAPLSVSLL*

Sequence

>CNT30712649
TCACAGCGGGGTTCATGGCCGCTCCAGAGAAGGCCCCACCCAACAAAATGTTAGCGCCGACAATGAAACCAATGGCGATGGGAGCAATAATTCCCAAATT
ACCCTTCTTGGGGTCAATGGCAGTTGCGTAGACCGTGTACACCAGACCGAAGGTCATCACGATCTCCAACACCAAGGCGTTGCCAACTCCAACTCCAGCG
GAGAGTCCGAATGCTGGAACAGTCTGCGATGCGTAACACCAGAACAAACTCTAACTATTAGTTATTATAGTTCGTTAATTAATTGATTAAAATAAAGATA
GGTAATAACGGTCTTACGGAGGCGGTGACGAAGGCCAGGAGGAGGGAGGCGACGATGGAGCCGAGGAGCTGGGCGATGACGTAGACGATGCCGCGGAGGA
AGGTGATGTTGCCGCCGACGAAGGCGCCGAAGAGGGCGAATGCATGGGCGATGGAGGCGGAGATGAGGCCGGCAGGGGTGGCAGCGCCGTTGTCGGTGAG
CTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTTGAGATGAACTCAGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTCGCC
TCTTCAGGCCTTCCGACGGCGATGTTTCTGATCGGCATCTTCTTCAATTGACGCTGACGATTATGATGAGATCAAGTGAACACCGATCACTCACTGAAAT
CACTCTCTGTTTCGCTGTT