Detailed information on CNT30712527


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Glycine maxManihot esculenta26.1221.2285.25122forward
CNT30628476Glycine maxVigna unguiculata56.7535.186.04265forward
CNT30119447Glycine maxCitrus clementina32.5519.6980.26152forward
CNT30330754Glycine maxDioscorea rotundata29.3422.283.21137forward

Expression of CNT30712527

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PNPNSTPHSNPSPVVLFPSSLDFFLISSRMNKTHALDMFPYSLSTCRVDWSFSGLSRSFSST*

>peptide 2 (70 aa)
MGSKASTRLFSMFFEMIPGTSFKRCPSIAPSESGRIVWAADIISNIGRSTAGSGSDPMINAAAPSPNSACP

>peptide 3 (94 aa)
MPGGLEFLRLEPELLLDLIEDRGTTGMCDPEDRVPVADPDGLKSFNKTLLNVLRDDPGHIFQEVPIYSTVRVGQDCLGGRYHLEYRPLHCWVGV*

Sequence

>CNT30712527
CCCGAATCCGAATAGCACCCCCCACTCTAACCCTTCTCCAGTGGTACTCTTCCCTTCCTCCTTAGACTTCTTCCTCATTTCATCCAGAATGAACAAAACA
CACGCGCTTGACATGTTTCCGTACTCACTCAGCACATGCCGGGTGGACTGGAGTTTCTCCGGCTTGAGCCGGAGCTTCTCCTCGACTTGATCGAGGATCG
CGGGACCACCGGGATGTGCGATCCAGAAGATAGAGTTCCAGTCGCTGATCCCGATGGGCTCAAAAGCTTCAACAAGACTCTTCTCAATGTTCTTCGAGAT
GATCCCGGGCACATCTTTCAAGAGGTGCCCATCTATAGCACCGTCAGAGTCGGGCAGGATTGTCTGGGCGGCCGATATCATCTCGAATATCGGCCGCTCC
ACTGCTGGGTCGGGGTCTGATCCGATGATCAACGCTGCGGCGCCATCTCCGAACAGTGCCTGTCCCA