Detailed information on CNT30712512


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 1e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381982Glycine maxManihot esculenta23.3818.1186.6790forward
CNT3042354Glycine maxPrunus dulcis20.2613.1587.1878forward
CNT30619970Glycine maxCajanus cajan81.0481.2591.35312forward
CNT30154709Glycine maxPrunus persica16.6220.3287.564forward
CNT30706776Glycine maxPrunus avium20.2628.0685.978forward
CNT30331222Glycine maxDioscorea rotundata22.8611.2186.3688forward

Expression of CNT30712512

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPRRKVMLPPTKRANAWAMEAEMRPAGVAAPLSVSLL*

>peptide 2 (66 aa)
GGGDEGQEEGGDDGAEELGDDVDDAAEEGDVAADEEGECMGDGGGDEAGRGGSAVVGELVVGDAGA*

Sequence

>CNT30712512
GGAGGCGGTGACGAAGGCCAGGAGGAGGGAGGCGACGATGGAGCCGAGGAGCTGGGCGATGACGTAGACGATGCCGCGGAGGAAGGTGATGTTGCCGCCG
ACGAAGAGGGCGAATGCATGGGCGATGGAGGCGGAGATGAGGCCGGCAGGGGTGGCAGCGCCGTTGTCGGTGAGCTTGTTGTAGGCGATGCCGGAGCCTG
AGCCGGCGAACACGAAGATGAAGGTTGAGATGAACTCAGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTCGCCTCTTCAGGCCTTCCGACGGCGATGTT
TCTGATCGGCATCTTCTTCAATTGACGCTGACGATTATGATGAGATCAAGTGAACACCGATCACTCACTGAAATCACTCTCTGTT