Detailed information on CNT30712448


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 9e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Glycine maxSetaria viridis23.0623.982.6598forward
CNT30376827Glycine maxArabidopsis thaliana31.2956.3687.97133forward
CNT30279437Glycine maxChenopodium quinoa30.5916.9786.15130forward
CNT3069232Glycine maxQuercus suber30.5927.4381.54130forward
CNT30628401Glycine maxVigna unguiculata3240.4889.71136forward
CNT30125320Glycine maxPhyscomitrium patens22.829.9784.5497forward
CNT30221211Glycine maxHordeum vulgare34.3512.6881.51146forward
CNT30447268Glycine maxSaccharum spontaneum36.9440.2685.35157forward
CNT30361473Glycine maxSorghum bicolor32.9426.0285140forward
CNT30154413Glycine maxPrunus persica32.9436.1885140forward
CNT30418220Glycine maxPapaver somniferum32.7132.3382.01139forward
CNT3052623Glycine maxAmborella trichopoda2016.7788.2485forward
CNT30329187Glycine maxDioscorea rotundata18.8220.6283.7580forward
CNT30114434Glycine maxEutrema salsugineum26.3528.1485.71112forward

Expression of CNT30712448

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PKWLHTSRKNINIMTDRHICPKINYMPIF*

>peptide 2 (31 aa)
MAHRLVSSKSPTRYASAASCNASTAWLWKRRS

>peptide 3 (44 aa)
MSKNQLHANFLKGRRHSHGHLAVFARITINTYSLTTLSLNKKEI*

Sequence

>CNT30712448
TCCAAAGTGGCTGCACACATCCCGTAAAAACATAAACATTATGACAGACAGACACATATGTCCAAAAATCAATTACATGCCAATTTTCTGAAAGGAAGAA
GACACAGTCATGGACACTTAGCAGTATTTGCCCGTATCACAATTAATACCTACTCCCTAACAACCCTATCTTTGAATAAAAAAGAAATCTGAATAACAAA
ACACCATCCGCAGCCACCCATCATCATCTTCACAACCACCACCACCACCACCACATCAAGCACGCTCACCACGAATCCTTCTTGCCAGCTGGATATCTTT
GGGCATAATAGTTACACGCTTAGCGTGAATGGCACACAGATTAGTATCCTCAAAGAGTCCAACAAGGTATGCCTCAGCAGCCTCTTGCAATGCAAGCACA
GCATGGCTCTGGAAACGCAGATCAG