Detailed information on CNT30712407


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2PMN7|NU1C_SOYBN, E-value = 3e-178

BLAST vs NONCODE:
NONMEST004538, E-value = 9e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Glycine maxSetaria viridis8.6327.7285.98107forward
CNT30531354Glycine maxEucalyptus grandis91.9442.7385.881140forward
CNT30317759Glycine maxCorylus avellana92.0255.9687.821141forward
CNT30518402Glycine maxJuglans regia20.0865.0190.36249forward
CNT30615574Glycine maxSesamum indicum84.4470.3284.621047forward
CNT3020678Glycine maxCitrullus lanatus8.7928.2488.07109forward
CNT30406240Glycine maxBeta vulgaris19.5293.4490.91242forward
CNT30201817Glycine maxPisum sativum49.5299.3591.53614forward
CNT30569544Glycine maxActinidia chinensis92.0230.8885.011141forward
CNT30237694Glycine maxBrassica oleracea55.5662.9285.34689forward
CNT30262672Glycine maxBrassica rapa49.848.6384.47618forward
CNT30608772Glycine maxGossypium raimondii24.9298.4189309forward
CNT30215974Glycine maxHelianthus annuus53.2390.1684.24660forward
CNT30689544Glycine maxTriticum urartu43.478.6381.63539forward
CNT30596717Glycine maxOryza meridionalis41.2955.0583.59512forward
CNT30360555Glycine maxLactuca sativa88.3110085.021095forward
CNT30151942Glycine maxPrunus persica93.7149.5185.81162forward
CNT3057989Glycine maxAmborella trichopoda35.6584.1985.75442forward
CNT3035415Glycine maxCucumis melo53.7199.786.34666forward
CNT30148081Glycine maxBrachypodium distachyon47.0257.5583.53583forward
CNT30116024Glycine maxOryza nivara32.5890.1884.9404forward
CNT30723989Glycine maxLupinus angustifolius32.3428.7791.27401forward

Expression of CNT30712407

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFDLFQKKSETNMYGIEIFEPPSKELLQVRKK*

>peptide 2 (33 aa)
MTDIDSPILNKQISPLDGIRFSLKSNFVSSRRA*

Sequence

>CNT30712407
CATATCATGAATATCTCCAAATATTTTTTTCTTTCTCTTATTTGACACAAGTTATGAATATATAAGGTCCACTTTTTTTTACAGTGAAAACAGTTGAGAC
AAAGTTGTTAATAATAGATTGCTGAGAGAAATGGGTAAAAGAAATTTCCACCCAAGATTTCATAATTGATCTATTCTTAGCCTAGGCAAAGTCCATCTTG
TTGCGATAGAAAGGAATAAGAATAAATAAGTTTTAGCTAGTGTAATAAAGATATCAATTATCATTACAAAAACTCCATATGTTTGATTTATTTCAAAAAA
AGTCAGAAACGAATATGTATGGAATAGAGATATTTGAACCACCAAGTAAAGAACTGTTACAAGTAAGGAAGAAATGAATAGGTTTAAATAGGAAGCAACA
TAAAATAAACCAAATTTGATACCCGAGTATTCGGTTTGATAACCCGCTACTAGTTCTTCTTCCGCTTTCGGTAAATCAAAAGGTAATCTTTCACATTCTG
CTAGGGACAAGATTAGAAAAACAATGAAACCCATAGGTTGACGCCACAAATTCCATCCCCAAAAGCCATATTTTTATTGTGCGTCAACTATATCAACTGT
ACTTAAACTGTTAGATAATCCTAATATTGATAACACACATAGAGTTAATGGTATTTCATAACTAATCGATTGAGCAGCTTCTCGTAGACCACCCAAAAAA
GAATATTTATTATTTGACCCATATCCTAACATAAGAAGTCCAATGGGAGCAATACTCGAAATAGCAATCCATAAAAAAACACCAATATTCAGATCAGATA
AAACAAAGTTATAGCCAAAAGGAATTACTTAATAGCTTATTATAATCGATATGACTGATATAGATAGTCCTATACTGAATAAACAAATATCTCCTCTAGA
TGGAATAAGATTCTCTTTGAAAAGTAATTTTGTTTCGTCTAGGAGAGCTTGAAGAACTCCAAAAGGACCTGTGTATTCAGGTCCAATACGTTGTTGTATC
CCTGCGGATATTTCCCTTTCTAACCATACAATTGCTAGTACACTTATCGTAATTCCCAATATAAGAATCAAAATAAGGGCAAATACCCATATAATTCCAT
ATATCTCTTTAAAAGATTCCAATCTGAAAAAAAATGGATATCTTGTATCTCTGTTAAATAAATTATCATTTCAACGATCAACTTCTCCCATAATAATATC
TATGCTACCTAGTATTGTCATAATATCGGCCAATTTCATT