Detailed information on CNT30712228


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516978Glycine maxJuglans regia36.5427.2783.87186forward
CNT30698134Glycine maxQuercus lobata50.113.6883.92255forward
CNT30635301Glycine maxCapsicum annuum39.2950.3880200forward
CNT3084834Glycine maxVigna radiata59.1478.1888.37301forward
CNT30172563Glycine maxTrifolium pratense49.3136.9784.06251forward
CNT30620323Glycine maxCajanus cajan71.7120.4389.86365forward
CNT30360227Glycine maxLactuca sativa56.9753.2177.59290forward
CNT3027985Glycine maxTheobroma cacao47.9444.9480.74244forward
CNT3049140Glycine maxCucumis sativus32.2251.4180.49164forward

Expression of CNT30712228

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MGPPEGSHGPGPPRSLLVVDLSWLAIGEAAAMMMALCCC*

>peptide 2 (53 aa)
SSLDVVWKVQDVEEEVGPNNTRNASEEEASGELGPPISSLELIGLLLAARQGQ*

Sequence

>CNT30712228
TTTCTTCACTTGATGTAGTATGGAAGGTCCAAGACGTAGAGGAGGAAGTAGGCCCAAATAACACCCGAAATGCCTCCGAAGAAGAAGCCTCCGGTGAACT
TGGCCCACCCATCAGCAGTTTGGAGCTGATCGGGCTCCTTCTTGCGGCCCGTCAAGGTCAGTGACGGGGCAGTGGATGGGTCTCCTTCGTTAAAAGATGA
AATCCCATAGATTGTGAGGCAAAGGCTGAGGATCACCACAAGCCCACCAGCGGCGAGAGAGCCCGCTTGCCCGGCGATCTCGGTGTTCCTCAGAGGCCCG
GCCTTCACGAATGGGCCCACCAGAAGGTAGCCATGGGCCAGGCCCACCTCGATCCCTCTTAGTAGTGGACTTGAGTTGGCTTGCCATAGGAGAAGCAGCT
GCCATGATGATGGCCTTGTGTTGTTGTTAGTTCCACACAGTGGCTTAAGTGAGGGACCGAACTGGCTAAGTGCAAGATCAAGGTTGTGGCTGTTGAAGGC
CCTCTTATC